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Detailed information on CNT30261302


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Brassica rapaSetaria italica43.9130.2782.82227forward
CNT30530404Brassica rapaEucalyptus grandis64.9994.6583.63336forward
CNT30316147Brassica rapaCorylus avellana74.2751.5484.11384forward
CNT30703138Brassica rapaQuercus lobata76.2175.1982.49394forward
CNT30375121Brassica rapaArabidopsis thaliana45.6532.2883.05236forward
CNT30499549Brassica rapaCoffea canephora81.2485.7181.19420forward
CNT30615836Brassica rapaSesamum indicum31.9143.0880165forward
CNT30268105Brassica rapaChenopodium quinoa76.9847.4480.4398forward
CNT3021247Brassica rapaCitrullus lanatus77.7643.6582.34402forward
CNT30729539Brassica rapaCorchorus capsularis82.463.3979.58426forward
CNT3068683Brassica rapaQuercus suber76.480.2883.04395forward
CNT30524728Brassica rapaPhaseolus vulgaris76.9873.780.4398forward
CNT30486152Brassica rapaOlea europaea46.8126.7481.82242forward
CNT30506399Brassica rapaNicotiana attenuata62.6797.8980.86324forward
CNT30710642Brassica rapaGlycine max28.2415.6181.51146forward
CNT3091042Brassica rapaSolanum tuberosum43.3361.3781.25224forward
CNT30177095Brassica rapaSecale cereale38.4914.3682.91199forward
CNT30289293Brassica rapaTriticum aestivum25.3443.0984.73131forward
CNT30223417Brassica rapaHordeum vulgare43.3398.6882.59224forward
CNT30590847Brassica rapaMusa acuminata19.5422.186.14101forward
CNT3084565Brassica rapaVigna radiata65.9620.1880.35341forward
CNT30539234Brassica rapaBrassica napus98.6555.7499.22510forward
CNT30511842Brassica rapaSolanum lycopersicum35.239.7481.87182forward
CNT30143836Brassica rapaMedicago truncatula74.0865.6982.77383forward
CNT30244810Brassica rapaAvena sativa61.3239.2378.23317forward
CNT30457070Brassica rapaSaccharum spontaneum75.0556.9881.96388forward
CNT30131528Brassica rapaLolium perenne58.2265.2982.06301forward
CNT30231964Brassica rapaAnanas comosus36.1715.3382.89187forward
CNT3066796Brassica rapaLeersia perrieri61.3281.4979.18317forward
CNT30653881Brassica rapaRosa chinensis78.3437.9279.26405forward
CNT30718631Brassica rapaMalus domestica golden64.9958.5480.36336forward
CNT30339698Brassica rapaEragrostis tef53.7722.5183.09278forward
CNT30477892Brassica rapaArabidopsis halleri74.2735.8984.38384forward
CNT30363710Brassica rapaSorghum bicolor43.3338.1681.25224forward
CNT30595456Brassica rapaOryza meridionalis38.134.5681.73197forward
CNT30359656Brassica rapaLactuca sativa71.9522.0182.26372forward
CNT30425316Brassica rapaPapaver somniferum38.6841.4984.5200forward
CNT30570592Brassica rapaVitis vinifera41.0165.6382.55212forward
CNT30645151Brassica rapaCannabis sativa42.1722.8882.11218forward
CNT3055709Brassica rapaAmborella trichopoda61.5148.6281.13318forward
CNT30105598Brassica rapaOryza longistaminata74.4755.8880385forward
CNT30319856Brassica rapaAsparagus officinalis49.3291.0781.18255forward
CNT30574680Brassica rapaOryza barthii46.2326.0982.43239forward
CNT30580197Brassica rapaEchinochloa crusgalli76.7948.1881.11397forward
CNT30499107Brassica rapaDigitaria exilis42.3656.0181.74219forward
CNT30115589Brassica rapaOryza nivara46.2316.7582.43239forward
CNT30594668Brassica rapaEragrostis curvula44.4968.2580.87230forward
CNT30603529Brassica rapaOryza punctata70.647.7181.64365forward
CNT30174824Brassica rapaVigna angularis57.8331.4779.93299forward
CNT30550386Brassica rapaOryza brachyantha52.0397.8281.78269forward
CNT30337932Brassica rapaCynara cardunculus65.3841.2281.66338forward
CNT30726386Brassica rapaLupinus angustifolius42.1724.2583.49218forward
CNT3064271Brassica rapaSelaginella moellendorffii54.9351.6478.52284forward
CNT3050773Brassica rapaCucumis sativus48.7444.8480.56252forward

Expression of CNT30261302

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMHHVLFTPREEVIHHDHRVSPLHQPIHQMRPHEPRAARHDHSQPLAFQSQRDFPPR*

Sequence

>CNT30261302
ACCGATGGGATTAACGTTGCCCCAGTAAGTCTCAACCTGAGGATGCTGAAGAGGATCACCGTAAACCTCACTAGTACTCGTCAGTAGAAACCTAGCACCC
ACTCTCTTGGCCAAACCAAGCATGTTCAACGTCCCAACCACATTCGATATGATAGTCTTGACGGGATTGAACTTGTAGTGAACAGGGGAGGCAGGGCAGG
CCAAGTGATAGATCTGATCCACCTCAAGAAGAATGGGCTCGACGACGTCGTGGCGTATGAGCTCGAAGTTAGGGTTCCCGAAATGATGCATCACGTTCTC
TTTACTCCCCGTGAAGAAGTTATCCACCACGATCACCGTGTCTCCCCTCTCCATCAGCCGATCCACCAGATGCGACCCCACGAACCCCGCGCCGCCCGTC
ACGACCACTCTCAGCCCCTTGCGTTTCAATCCCAGCGGGATTTTCCCCCCCGTTGACCCGATCCGGCTCACGTACTCGACGCTGGGCCTCCTCTGGGCCG
GAACGTGCGACTCCTCG