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Detailed information on CNT3026124


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 5e-93

BLAST vs NONCODE:
NONPOPT000734, E-value = 1e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314841Populus trichocarpaCorylus avellana85.1850.679.22592forward
CNT30699090Populus trichocarpaQuercus lobata35.5462.8579.35247forward
CNT3069516Populus trichocarpaQuercus suber26.6258.7385.41185forward
CNT3090659Populus trichocarpaSolanum tuberosum17.9922.3683.2125forward
CNT30222581Populus trichocarpaHordeum vulgare19.2855.8381.34134forward
CNT30713283Populus trichocarpaMalus domestica golden47.3426.6482.98329forward
CNT30152410Populus trichocarpaPrunus persica18.5630.586.05129forward
CNT30573490Populus trichocarpaVitis vinifera46.768.8580.92325forward
CNT30707309Populus trichocarpaPrunus avium46.3341.681.99322forward

Expression of CNT3026124

Peptides detected in this lncRNA

>peptide 1 (65 aa)
AYWHSFFLDLQKQKGWEALLMCPLLLPAFELQHSWRDDPRGAIECTKVLQLSASWQSVHHPPFQF*

>peptide 2 (33 aa)
MHQSPTIVSFLAICASPSFSILIRSSSPLSRLL*

>peptide 3 (29 aa)
GILAFLLPGPAEAKGLGGIVNVSPSPSSI*

>peptide 4 (43 aa)
MRFDVEMEDSLITTLVKILYSFGHAKSNILKFLPTKSGCVAML*

Sequence

>CNT3026124
GGCATATTGGCATTCCTTCTTCCTGGACCTGCAGAAGCAAAAGGGCTGGGAGGCATTGTTAATGTGTCCCCTTCTCCTTCCAGCATTTGAACTACAGCAT
TCATGGAGGGACGATCCACGGGGTGCCATTGAATGCACCAAAGTCCTACAATTGTCAGCTTCTTGGCAATCTGTGCATCACCCTCCTTTTCAATTCTGAT
TCGCAGCTCTTCTCCATTATCCAGGCTGTTGTAGACCCATTCTGGGAAGTAGATTTGGTTGTTGTTCTCTATCTTATCATCGATAGTCTTCCTCCCCCCA
ACCATTTCAAGCAGCACCATTCCAAAACCATAAACATCAGACTTGTAGGATACATTACCGAAGTTCCTAGAGAACACTTCAGGTGCAATGTACCCCAAGG
TTCCTCTAGCTGTAGTCATGGAAACTGCACTCTGATCCTTGGAGCATAGTTTCGCCAGACCAAAATCAGAGATTTTTGGATTGAAATTGTCGTCTAGCAA
GATGTTATGAGGTTTGATGTCGAAATGGAGGATTCGCTGATCACAACCTTGGTGAAGATACTCTATTCCTTTGGCCATGCCAAGAGCAATATCCTGAAGT
TTCTCCCAACTAAGAGCGGATGCGTCGCCATGCTCTGAAGATATAAATTTCTCTAGTGATTCATTTGACAGGTAGTCGTAAACTAGAGCTCTTCT