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Detailed information on CNT30261201


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI4|PSAL_ARATH, E-value = 3e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376279Brassica rapaArabidopsis thaliana25.938.5989.13230forward
CNT30730016Brassica rapaCorchorus capsularis15.220.3981.48135forward
CNT30629841Brassica rapaVigna unguiculata16.3324.7982.76145forward
CNT30710020Brassica rapaGlycine max17.4533.7782.58155forward
CNT3042792Brassica rapaPrunus dulcis16.138.7583.92143forward
CNT30635301Brassica rapaCapsicum annuum11.3725.4482.18101forward
CNT3094368Brassica rapaSolanum tuberosum10.3635.5282.6192forward
CNT30294278Brassica rapaTriticum aestivum12.7326.2282.3113forward
CNT30222283Brassica rapaHordeum vulgare14.5330.7182.17129forward
CNT30564216Brassica rapaActinidia chinensis11.3745.2983.17101forward
CNT3084834Brassica rapaVigna radiata11.0425.4584.6998forward
CNT30437582Brassica rapaAegilops tauschii12.7334.2482.3113forward
CNT3075006Brassica rapaBrassica juncea33.7866.67100300forward
CNT30614377Brassica rapaArabis alpina16.155.2187.41143forward
CNT30454500Brassica rapaSaccharum spontaneum14.0834.5380.8125forward
CNT304795Brassica rapaZea mays13.7426.9981.15122forward
CNT30610860Brassica rapaGossypium raimondii6.8720.6886.8961forward
CNT30217087Brassica rapaKalanchoe fedtschenkoi22.8619.5481.77203forward
CNT30683149Brassica rapaTriticum urartu14.1928.4481.75126forward
CNT30359901Brassica rapaLactuca sativa21.8528.6180.41194forward
CNT30154501Brassica rapaPrunus persica12.2734.9481.65109forward
CNT30570425Brassica rapaVitis vinifera20.8310.6481.62185forward
CNT30644515Brassica rapaCannabis sativa20.0530.882.02178forward
CNT3027985Brassica rapaTheobroma cacao15.3225.0582.35136forward
CNT3049140Brassica rapaCucumis sativus14.0839.1880.8125forward

Expression of CNT30261201

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEHITFHCIYQEGNLLLSYNINSVEEVLQSYKKIVIPCYGY*

>peptide 2 (56 aa)
FAIKVYCQMSTNHYVNKDQEIFKRRSIVLYKDDPEIQDSCSDKSKKETMVQESLCR*

Sequence

>CNT30261201
TTTTGCAATAAAAGTTTATTGTCAGATGTCAACAAATCATTATGTGAATAAAGACCAAGAAATATTTAAGAGGAGATCCATAGTATTATACAAAGACGAC
CCTGAGATTCAAGATTCTTGCTCAGACAAAAGTAAAAAAGAAACAATGGTGCAAGAGAGTCTCTGTAGATAACATACTGGTGAAGCTCATATTTTGAACT
ACATTCATTTGACGTAATAAGGAAGGTCAAGAACGTAGAGGAGAAAGTAAGCCCAAGTCACACCAGAGATCCCTCCGAAGAAGAACCCTCCCGTGAATTT
TGCCCATCCCTCAGCTGTCTGAAGCTGATCGGGCTGCTTCTTCCGCCCAGTCAACGTCAAACTCGGAGCAATCGAAGGCTCTCCTTCCTTGAACGAAGAG
ATTCCGTAGATAGTGAGGAGAGGGTTGACGGCGGTGCGGTAAGCCGGGAGGTTGGAAAGATACCACGCAATCAATGGGCTTGACGTTACAGGAGTCTCCA
AACTTCCGATGAATGGATCGCCGTTGATTGGTTGGACCACTTGAAATGTTGGCTGCCAAATTATACTTGTCAGATTATTTGCATTCTAAGTTTTTTTGAT
CGATATATCTATGTATATATGGAGCATATAACTTTTCATTGCATATATCAAGAGGGCAACTTACTATTATCTTATAATATTAATTCTGTAGAAGAGGTTC
TGCAGAGTTATAAAAAAATTGTGATACCTTGTTATGGCTACTGAACCCTAACAAATCATCTAGATATGAATAAAATGTTGCTTTTCCTAATTTTTTTAAG
ACATCATATCGCATGATTGATAATTAGTATTGAAATCTGCACGAGTAATTTGTAGATTTGGCACATAATCTGATCTGCATCGTGTCGG