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Detailed information on CNT30261175


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Brassica rapaOryza sativa38.5640.3582.42182forward
CNT30677847Brassica rapaSetaria viridis38.5637.2281.32182forward
CNT30318271Brassica rapaCorylus avellana53.1825.382.87251forward
CNT30546681Brassica rapaIpomoea triloba53.8154.0481.5254forward
CNT30703567Brassica rapaQuercus lobata59.7555.8480.85282forward
CNT30375418Brassica rapaArabidopsis thaliana23.3146.6186.36110forward
CNT30617135Brassica rapaSesamum indicum55.7226.2283.27263forward
CNT3069058Brassica rapaQuercus suber21.6111.6685.29102forward
CNT30197034Brassica rapaPisum sativum51.2729.9183.06242forward
CNT30504865Brassica rapaNicotiana attenuata39.8336.7284.57188forward
CNT30712284Brassica rapaGlycine max31.5731.783.89149forward
CNT3042757Brassica rapaPrunus dulcis51.9140.4383.67245forward
CNT3092650Brassica rapaSolanum tuberosum17.1621.0986.4281forward
CNT30178595Brassica rapaSecale cereale46.1936.5879.36218forward
CNT30285178Brassica rapaTriticum aestivum46.1945.9980.28218forward
CNT30224394Brassica rapaHordeum vulgare33.4745.879.75158forward
CNT30382783Brassica rapaTriticum turgidum46.193979.82218forward
CNT30563984Brassica rapaActinidia chinensis34.9679.3381.21165forward
CNT3086297Brassica rapaVigna radiata48.7319.7879.57230forward
CNT30553196Brassica rapaOryza glaberrima38.5632.6280.77182forward
CNT30172429Brassica rapaTrifolium pratense56.3641.1180.83266forward
CNT30435717Brassica rapaAegilops tauschii46.1935.9179.82218forward
CNT30256114Brassica rapaAvena sativa46.1942.2583.03218forward
CNT30655816Brassica rapaTriticum dicoccoides46.1934.2879.82218forward
CNT3059678Brassica rapaArabidopsis lyrata28.3927.8686.57134forward
CNT3082467Brassica rapaBrassica juncea55.7236.6881.37263forward
CNT30611328Brassica rapaArabis alpina38.5639.9186.26182forward
CNT30135649Brassica rapaLolium perenne46.1942.578.9218forward
CNT30211420Brassica rapaHelianthus annuus56.3653.6380.45266forward
CNT30679384Brassica rapaTriticum urartu46.1935.9780.28218forward
CNT30619612Brassica rapaCajanus cajan29.0332.785.4137forward
CNT30596905Brassica rapaOryza meridionalis41.131.9180.41194forward
CNT30357929Brassica rapaLactuca sativa61.4464.7379.66290forward
CNT30370989Brassica rapaOryza glumipatula48.7336.880.43230forward
CNT30414711Brassica rapaPapaver somniferum60.3829.8181.4285forward
CNT30645276Brassica rapaCannabis sativa61.6553.8980.76291forward
CNT30325970Brassica rapaAsparagus officinalis39.1926.8183.24185forward
CNT30148852Brassica rapaBrachypodium distachyon28.8130.6380.88136forward
CNT30101020Brassica rapaOryza rufipogon20.7616.8184.6998forward
CNT30577582Brassica rapaOryza barthii41.130.580.41194forward
CNT30496126Brassica rapaDigitaria exilis40.4728.0979.58191forward
CNT30117618Brassica rapaOryza nivara38.5640.4481.32182forward
CNT3050826Brassica rapaCucumis sativus28.3939.382.09134forward

Expression of CNT30261175

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLSLRTFLCLFAPPLPNPLPPLPLPDIRTFSRFR*

>peptide 2 (29 aa)
VIDSFINPKREITQTKKQTSKGVIKPKTY*

Sequence

>CNT30261175
GAGTAATTGATTCTTTTATAAATCCCAAAAGAGAAATTACACAAACAAAGAAACAAACCAGCAAAGGAGTGATAAAGCCTAAAACCTACTAGATTTCTTG
ACAGCAAGACTTAATTAAGTAGCACCCATAAACCAAACCGAAATCTTAAACCGTACGCCCTTGCCTCTTCAAAGCATAAACAACGTCCATCGCCGTAACC
GTCTTCCTCCTCGCGTGCTCCGTGTACGTCACGGCGTCTCTAATCACATTCTCGAGAAAGATCTTCAGAACTCCTCTGGTCTCTTCGTAGATCAACCCGC
TGATTCTCTTCACGCCTCCTCTACGAGCGAGACGCCTGATCGCAGGCTTGGTGATTCCTTGGATGTTGTCTCTCAGAACCTTCCTGTGCCTCTTCGCTCC
TCCTTTGCCCAACCCCTTGCCTCCTTTGCCTCTTCCTGACATTAGAACTTTCTCGAGATTTAGATGATTGAG