« Back to Brassica rapa search


Detailed information on CNT30261067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Brassica rapaOryza sativa4.4921.9893.3360forward
CNT30207452Brassica rapaHelianthus annuus4.6422.2291.9462reverse complement

Expression of CNT30261067

Peptides detected in this lncRNA

>peptide 1 (45 aa)
CQFDNSCKYVIVVHLNYFQVLSFRSFHISFILLMNKLGLESNQGS*

>peptide 2 (48 aa)
MIVQNTKHKRFKKLESNHQRLEDRARQRLLRSLSHLSALPLQSPHALLL

>peptide 3 (92 aa)
MLSQTRVYSCQVGDHDLNTWEATRLLFSFNASGPDYKPYKHMLPANFKICKLSAIFYESFIYCYLVKPIIFFLLAVYYISQQFKAMLHKTKA*

>peptide 4 (35 aa)
MLAALTTSHTNICFQPILKYVNYQPFFMRVLFTVI*

Sequence

>CNT30261067
TGCCAGTTTGACAACTCTTGTAAGTATGTTATAGTGGTCCATCTTAATTATTTCCAAGTCTTATCTTTTCGATCATTTCATATCTCATTTATTTTACTTA
TGAATAAGCTAGGACTGGAATCCAACCAAGGAAGTTAGCTTTATCTCGTTTCTGATGTTCCATAGCTCATACACATTGTGCAGTCACTGACCCTGAAAAT
GACTGGAACAGTCCAGGCAAACAAGAGATCAGAACTGGATGGTAAATTAAGAGCTAGCCCTGGGTACACAACATCCTCTTGAGTACCAAGACCCGCATCC
ACTAAAGTCCATTGCCAGTGTATATCCCTGAATGTGCAACCCCTGCCTTGTATGCTTTCACAAACGAGAGTATACTCCTGTCAAGTTGGTGATCATGATC
TGAATACATGGGAAGCTACTCGTCTTCTGTTTAGTTTTAATGCTAGCGGCCCTGACTACAAGCCATACAAACATATGCTTCCAGCCAATTTTAAAATATG
TAAATTATCAGCCATTTTTTATGAGAGTTTTATTTACTGTTATCTAGTAAAGCCAATAATATTTTTTTTGCTTGCGGTCTATTATATTTCACAGCAATTC
AAGGCCATGCTCCATAAAACGAAGGCCTGACGTAACAGCAGACAGATAACACGGAGGACGCTATATCACTAATCCTCAAAGGGACATTATTATCAAAAAA
TCTCAGGTCTATACTCTCAGCTCTCTTGCCATGAGTGAGTATCTGCATAGTAGCCAGAGGTCTTGCACCAATCTCTTGAATCATATACCAGTGGCTGGAT
AAGATCAAGACCAGATCTAAGGAGGGCTCCATCGCTAGGCCCATTATTTATCTGCCTACATACAATGCAAGTCTCAAAAATAAATGAAACAACACTTTGG
TGGGCTGTCTTGACCATTATTTAGACGACGCTCTTGCATCCCCTTAGCATCATCATCAGTTTCATTTTCTTCATCGAGTCAATTATATTGTATATACTCT
CTCCTCTTTTCTTTTAATGTGAGAAAGGGTATTATAAGAGAATCGAGAAGGTGTGTGCTACGTCTCAATTCTTAATCGTTCAATCAATGGTTAGGGTGTT
GCACTTAAATTTTATAACATTGAAGCCTAATATTAAACCTCTGCTTTGTAGATAATAAAAGGGAGTAAGCAAATAACATGTTCTACACATGATTGTTCAA
AACACAAAACATAAACGGTTCAAGAAACTAGAAAGCAACCACCAGAGATTAGAAGATAGAGCAAGACAAAGACTACTTAGATCTCTGTCTCATCTTTCTG
CGCTTCCTCTTCAATCTCCTCATGCGCTTCTTCTTC