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Detailed information on CNT30260967


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636104Brassica rapaCapsicum annuum75.675.3584.19917forward
CNT30312779Brassica rapaCamelina sativa77.0878.5188.98935forward
CNT3066849Brassica rapaLeersia perrieri74.9468.0482.62909forward
CNT30120658Brassica rapaCitrus clementina74.8690.2682.27908forward
CNT30114619Brassica rapaEutrema salsugineum75.184.2786.5911forward

Expression of CNT30260967

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSSVIVFPVKVFTKICMPPRRRKTK*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTR*

Sequence

>CNT30260967
ACGACTCTTGTCACCTGATAATTCTCAATTGAACCATACAGAGCAAACGGCACAACTTTTATACACTTAGAAAGCACAATAGGGAAACATAAAGAGCAAC
GACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATAAGACCCCAAAACATA
AACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGAGGACCAAGTGAAG
AGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCC
TTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATAC
CACCACGGAGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATCAG
CCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTTCCT
GTTAAAGTCTTCACGAAGATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCAT
CTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCT
CTCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGG
ATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGG
CCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAAC
AACGATCAATAAC