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Detailed information on CNT30260853


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30510145Brassica rapaSolanum lycopersicum76.7348.3885.63689forward
CNT3061726Brassica rapaArabidopsis lyrata48.8969.1390.66439forward
CNT3074551Brassica rapaBrassica juncea100.4599.6797.45902forward
CNT30613113Brassica rapaArabis alpina77.3975.6386.33695forward
CNT30217467Brassica rapaKalanchoe fedtschenkoi75.7279.1684.85680forward
CNT30214147Brassica rapaHelianthus annuus76.0684.9583.89683forward
CNT30477816Brassica rapaArabidopsis halleri77.1785.7788.17693forward
CNT30410512Brassica rapaPapaver somniferum76.0669.9184.33683forward
CNT3021694Brassica rapaPopulus trichocarpa76.9571.3183.79691forward
CNT30114617Brassica rapaEutrema salsugineum75.6186.0687.48679forward

Expression of CNT30260853

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTR*

>peptide 2 (39 aa)
IKSNDYIIIFQNNPIWFITEEKTRTQSEFINYKTPKHKP*

Sequence

>CNT30260853
CATAAAGAGCAACGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATAAG
ACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGA
GGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG
AGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACG
AAAATCTGCATACCACCACGGAGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCCAACTGCTTTC
CGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGT
GATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC
AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGA
TGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAACGATCAATAAC