Detailed information on CNT30260812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM8|DCAM3_BRAJU, E-value = 9e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374956Brassica rapaArabidopsis thaliana46.219.9488.81134forward
CNT30211480Brassica rapaHelianthus annuus20.3416.386.4459forward
CNT30719121Brassica rapaMalus domestica golden19.6620.1487.7257forward

Expression of CNT30260812

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RISSSWDLVRARRPRPLESWKKLGSKKETSRRFS*

>peptide 2 (42 aa)
ENLVKLGPGQSTETKALGVLEEARLEERDLEALLVAFETDCR*

Sequence

>CNT30260812
GAGAATCTCGTCAAGCTGGGACCTGGTCAGAGCACGGAGACCAAGGCCCTTGGAGTCTTGGAAGAAGCTAGGCTCGAAGAAAGAGACCTCGAGGCGCTTC
TCGTAGCCTTCGAAACCGATTGCAGATAAGGCCATTGTAGTAGGAGGAGAGAACGATGGGAGTGGGGAACCAAGCAGAAACAGAGCTTAGAAGAAAAAAG
TAAATTATAAACTGGAAATTATAAAAAAAAGCTATAACTATAGCAGGAGGACTCGGTGCACGCTACAACTCAGGATGGCCTCTTAGCGCA