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Detailed information on CNT30260766


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235037Brassica rapaBrassica oleracea102.3537.8993.55915forward
CNT30312527Brassica rapaCamelina sativa77.1881.7588.7690forward

Expression of CNT30260766

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTR*

>peptide 2 (31 aa)
MVSELSTSSVIVFPVKVFTKICMPPRRRKTK*

>peptide 3 (38 aa)
KSNDYIIIFQNNPIWFITEEKTRTQSEFINYKTPKHKP*

Sequence

>CNT30260766
AAGAGCAACGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATAAGACCC
CAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGAGGAC
CAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG
ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAA
TCTGCATACCACCACGGAGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGC
GAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATC
GTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCCAAGG
TTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGT
GTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAACGATCAATAAC