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Detailed information on CNT30260763


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541492Brassica rapaBrassica napus100.4455.5491.33692forward
CNT30234332Brassica rapaBrassica oleracea101.1658.2892.11697forward
CNT3074281Brassica rapaBrassica juncea102.3259.3997.16705forward

Expression of CNT30260763

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IEPYRANGTTFIHLESTIGKHKEQRLYYNISE*

Sequence

>CNT30260763
CAATTGAACCATACAGAGCAAACGGCACAACTTTTATACACTTAGAAAGCACAATAGGGAAACATAAAGAGCAACGACTATATTATAATATTTCAGAATA
ATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAA
CGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAG
TCTGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACAT
TGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGAAGCCTGAGGACCAAGTG
AAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCC
TCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCAC