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Detailed information on CNT30260671


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616366Brassica rapaSesamum indicum66.1752.2487.16444forward
CNT30234371Brassica rapaBrassica oleracea103.1342.0991.76692forward
CNT3074284Brassica rapaBrassica juncea102.3899.1397.09687forward

Expression of CNT30260671

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLRTK*

>peptide 2 (39 aa)
IKSNDYIIIFQNNPIWFITEEKTRTQSEFINYKTPKHKP*

Sequence

>CNT30260671
ACATAAAGAGCAACGACTATATTATAATATTTCAGAATAATCCGATTTGGTTCATAACGGAAGAGAAAACAAGGACGCAAAGCGAGTTCATCAATTATAA
GACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGG
AGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCG
GAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTGAC
AAAGATCTGCATACCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTG
CCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGG
TGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAATTTCACAAACAACAACGATCAATAAC