Detailed information on CNT30260575


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538978Brassica rapaBrassica napus74.4726.8799.29280forward
CNT30234693Brassica rapaBrassica oleracea57.4549.4393.52216forward
CNT30310073Brassica rapaCamelina sativa25.5321.7287.596reverse complement

Expression of CNT30260575

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MIITFNSFTFQGRSWWQRQGRTEPWLRQPLELFLIFFSFFVFFFL*

>peptide 2 (35 aa)
QVSYHIVSFVFFFFCQNTEHMYHLLRNDNSVQFES*

Sequence

>CNT30260575
CAAGTTTCCTATCATATAGTTTCATTTGTCTTTTTTTTCTTTTGTCAAAATACAGAACATATGTATCATCTGTTGAGAAATGATAATTCAGTTCAATTTG
AGTCATAAGATAAAACGCCAACACAGTTGAGAAATGAGGTTCGGTTTCTGATAAATCATACAAAGATACGACAAAGGAAGTTTAACAAATATACAAACAA
TCTCTTTCGCTGCTGCTCACTCGCATGATAATAACCTTTAATTCATTCACTTTCCAGGGACGAAGTTGGTGGCAAAGGCAGGGGAGGACAGAGCCATGGT
TGAGGCAGCCATTAGAACTTTTCTTGATCTTTTTTAGTTTTTTTGTTTTTTTTTTTTTGTGACTGGTGAGAGTGAT