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Detailed information on CNT30260188


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079106Brassica rapaBrassica juncea4.9223.690.4863forward
CNT30214058Brassica rapaHelianthus annuus5.7828.0391.8974reverse complement
CNT30107453Brassica rapaOryza longistaminata5.5526.7990.1471forward
CNT3035140Brassica rapaCucumis melo5.6229.2790.2872forward

Expression of CNT30260188

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLRKMVSSWALIFFWLMARYFSVRAVQNIRAGVNTSSRLCYCFA*

>peptide 2 (39 aa)
MEIKSSQPNRPREPWYQSSRIVLEVQTLFFFRIFFSVAC*

>peptide 3 (34 aa)
MLTCTSSKSNKYISDMTFKNENVLNFDHKFLNGI*

>peptide 4 (29 aa)
MTDLKKQYAHRVPRTHNQKVMSLALYQLS*

Sequence

>CNT30260188
GTGTAGTTCCTCGAAAAAAAAATGAAAGGTGTTCTCACCAACCCTAATATGAAACAAAGATCCTCTTTCCCCTTCCTGCAGCAGTGAACTGATGACGTTA
AGGCTTCCTCATAATTTTCATTTATTAGCTCCATCTCGAATTGTATTCAAAGCTTTCTTACTATCTTAGAGGCGGTGCCATGATCTGTATAAATAGAGTT
TTCAGCTGTCATATGAACTAGCTCGAGCAACAATGGAGATCAAATCAAGCCAGCCGAATCGTCCTCGAGAACCTTGGTATCAATCCAGCCGAATCGTACT
CGAGGTCCAAACTCTTTTTTTTTTCAGAATTTTTTTCTCTGTAGCGTGTTGAGGCAAGGCTTTTGCGTTTCTGGGAATCCCGAAATGTTAAGAAAGATGG
TGAGCTCATGGGCTTTGATATTCTTTTGGTTGATGGCAAGATATTTTTCTGTGAGAGCAGTTCAAAACATTAGAGCAGGTGTTAACACCTCGAGCCGGTT
GTGTTATTGTTTCGCTTGAGAGAAACTTATTCTGTTATATATAAGTTTAACTAATCAAATATTTGAAAGACATACACGCATTTAAATGAATCAAACGCTT
ACAAAAATAGGGAAAAGGTTTCAAATTCCTTTAATAATGTTCGAGTTTCGTTTCGACTTGATTGCTAGCTAGATTGAGATACAACAATACGGAAAAGGTT
TTTTTGTTTGCTTGAACAAACGCTTTGTTATTTTCCAAATAGAGAATCAACAGAAAAGGGAAAAAAAAATGACAGACTTGAAAAAACAATACGCCCACCG
TGTACCTCGAACCCACAACCAAAAGGTTATGAGCCTTGCGCTCTACCAACTGAGCTAGACGGGGTTGGTGATGTTAACATGTACAAGTTCAAAAAGTAAC
AAATACATTTCAGACATGACGTTCAAAAATGAAAATGTTTTAAACTTCGATCACAAATTTCTGAATGGGATCTAAAAGATATTCAAATTCAATGACATCT
ACAAAATTTAACTAATATGTATATTCTTATATGACAAAAATTTATATTATACGTTTACTTTAATTGTTAAAATTATTTTAAAGTTCACATCCCGCCCGTA
GGACGGGCCGACCCTAGTAATTTTATATACGTTTGTTTGTCAATTAACGATCTAACAAAAATCAATCAGGACAGTTAACAAAATTGTCACTCATATACTT
TACGTATGCAGTTTTCTTACTTAAAACTAAACCTGAAGTTGACGGTTGATATATATAAAATCTATAAAAATAGATTTTTA