Detailed information on CNT30259875


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 6e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30567883Brassica rapaActinidia chinensis32.854.1885.5690forward
CNT30237633Brassica rapaBrassica oleracea93.855.9985.6257forward
CNT309111Brassica rapaZea mays25.559.5488.5770forward

Expression of CNT30259875

Peptides detected in this lncRNA

>peptide 1 (44 aa)
DLVKSVGETGHELGVLEIRRRILANTLSLDVRLEGTCEASRGCF*

>peptide 2 (42 aa)
MSLVFWKSGGAFLLTLSALTSDWKEHVRRAEDVSSPKDFPTV*

Sequence

>CNT30259875
GATCTCGTCAAGAGTGTAGGTGAGACGGGTCATGAGCTTGGTGTTCTGGAAATCAGGAGGCGCATTCTTGCTAACACTCTCAGCCTTGACGTCAGATTGG
AAGGAACATGTGAGGCGAGCAGAGGATGTTTCTAGTCCGAAAGATTTCCCGACTGTCTGAGTCGACCGGAGGTGAGCACTGCCGCGTGAAGGAGCGGTGG
AGATTTTAGCGGCCTGAAGGAACGTAGAGGCGGATTGGAGAGAGGCAGCCATGGCCACAAAGTCTCTCAAAAAA