« Back to Brassica rapa search


Detailed information on CNT30259840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 9e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Brassica rapaOryza sativa24.9116.5187.572forward
CNT30674990Brassica rapaSetaria viridis38.4127.8284.68111forward
CNT30519871Brassica rapaSetaria italica67.4729.4686.15195forward
CNT30315797Brassica rapaCorylus avellana81.3135.5582.13235forward
CNT30547549Brassica rapaIpomoea triloba72.322783.73209forward
CNT30698248Brassica rapaQuercus lobata82.0132.4789.03237forward
CNT30267640Brassica rapaChenopodium quinoa80.9732.2384.19234forward
CNT3069241Brassica rapaQuercus suber82.0153.8688.61237forward
CNT30380641Brassica rapaManihot esculenta72.3230.2582.78209forward
CNT30631185Brassica rapaVigna unguiculata25.266.2986.373forward
CNT30200890Brassica rapaPisum sativum80.9738.0583.33234forward
CNT30709007Brassica rapaGlycine max72.6688.2485.24210forward
CNT3048083Brassica rapaPrunus dulcis81.6633.6282.63236forward
CNT3090157Brassica rapaSolanum tuberosum59.1726.5183.04171forward
CNT30177168Brassica rapaSecale cereale80.9731.4985.47234forward
CNT30283676Brassica rapaTriticum aestivum80.9736.2884.19234forward
CNT30219843Brassica rapaHordeum vulgare52.9426.6686.27153forward
CNT30398097Brassica rapaTriticum turgidum70.5926.6784.8204forward
CNT30565750Brassica rapaActinidia chinensis69.5518.2985.07201forward
CNT30591253Brassica rapaMusa acuminata34.9532.3782.18101forward
CNT3084175Brassica rapaVigna radiata72.3220.0682.78209forward
CNT30538358Brassica rapaBrassica napus21.4521.6887.162reverse complement
CNT30508643Brassica rapaSolanum lycopersicum59.8622.582.08173forward
CNT30441386Brassica rapaAegilops tauschii70.5942.585.78204forward
CNT30255419Brassica rapaAvena sativa80.9743.985.04234forward
CNT30657055Brassica rapaTriticum dicoccoides80.9744.7484.19234forward
CNT30309861Brassica rapaCamelina sativa64.0129.8486.49185forward
CNT30613891Brassica rapaArabis alpina63.3245.4186.34183forward
CNT30474628Brassica rapaSaccharum spontaneum44.6410.8587.6129forward
CNT30141394Brassica rapaLolium perenne70.5931.8386.27204forward
CNT306284Brassica rapaZea mays34.2646.2685.8699forward
CNT30610039Brassica rapaGossypium raimondii71.6323.5283.09207forward
CNT30720053Brassica rapaTriticum spelta80.9779.5984.62234forward
CNT30477972Brassica rapaArabidopsis halleri70.2458.6784.73203forward
CNT30368649Brassica rapaSorghum bicolor70.5948.5786.27204forward
CNT30622400Brassica rapaCajanus cajan80.9725.5782.05234forward
CNT30596421Brassica rapaOryza meridionalis48.119.886.33139forward
CNT30358858Brassica rapaLactuca sativa73.0136.5185.31211forward
CNT30414942Brassica rapaPapaver somniferum80.9728.7881.62234forward
CNT30644610Brassica rapaCannabis sativa66.4441.7486.98192forward
CNT3053477Brassica rapaAmborella trichopoda71.2832.9179.61206forward
CNT30148402Brassica rapaBrachypodium distachyon43.9425.8784.25127forward
CNT3099660Brassica rapaOryza rufipogon36.3323.1886.67105forward
CNT30585391Brassica rapaEchinochloa crusgalli80.9735.9485.47234forward
CNT3051266Brassica rapaCucumis sativus66.4425.685.42192forward

Expression of CNT30259840

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VLSDLADKTLEGELADQKLGALLVLPDLPQRHGSGTEPVRLLHSSGGRSRLPRRLGCELLPRGFASGGFSRGLLGTSHLRFEKVCSFLLRVATGGG

Sequence

>CNT30259840
GTCCTGAGCGATCTCGCGGACAAGACGCTGGAAGGGGAGCTTGCGGATCAGAAGCTCGGTGCTCTTCTGGTACTTCCTGATCTCCCTCAGCGCCACGGTT
CCGGGACGGAACCTGTGCGGCTTCTTCACTCCTCCGGTGGCCGGAGCAGACTTCCTCGCCGCCTTGGTTGCGAGCTGCTTCCTCGGGGCTTTGCCTCCGG
TGGATTTTCTCGCGGTTTGCTTGGTACGAGCCATTTGAGATTCGAAAAGGTTTGCTCTTTTTTGCTTAGAGTAGCCACGGGAGGAGGAG