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Detailed information on CNT30259492


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 6e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702258Brassica rapaQuercus lobata51.5738.5184.53181forward
CNT3020599Brassica rapaCitrullus lanatus58.6917.987.86206forward
CNT30380073Brassica rapaManihot esculenta38.7513.1886.76136forward
CNT30628366Brassica rapaVigna unguiculata35.338.6883.06124forward
CNT30505192Brassica rapaNicotiana attenuata55.5634.5182.05195forward
CNT30720770Brassica rapaTriticum spelta48.4328.3382.35170forward
CNT30365203Brassica rapaSorghum bicolor21.9435.8188.3177forward
CNT30705212Brassica rapaPrunus avium61.8258.9783.87217forward
CNT30723271Brassica rapaLupinus angustifolius68.0990.8783.26239forward

Expression of CNT30259492

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SANTMMPDLVSGNTHLSVCGLMVMRFTPGGGAKDVSFRDDVLKG*

Sequence

>CNT30259492
CTCGGCTAACACAATGATGCCAGACTTGGTGTCAGGGAACACCCACCTATCAGTCTGTGGCTTGATGGTGATGCGTTTCACACCAGGTGGTGGTGCAAAA
GATGTCAGCTTCAGAGACGACGTCCTCAAGGGTTAGAACTTGAAGGCCTTCCATGAGAGCCTGAAGGGCACAGATTGGATCGATCTCAGTCACGATCACA
CGTGCGCCAGCGGTTTTCATGGCTGCAGCACAACCCTTTCCGACATCACCGTAACCGCAGATAACAGCGACCTTTCCGGCGATCATGACATCAGTGGCTC
TCATGAGACCGTCAGGGAGAGAGTGGCGACATCCATACAAGTTGTCAAACT