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Detailed information on CNT30259423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Brassica rapaSetaria viridis24.3920.2792.44357forward
CNT30627167Brassica rapaDaucus carota24.3232.4294.94356forward
CNT30687569Brassica rapaTriticum urartu24.3917.5592.16357forward
CNT30578173Brassica rapaOryza barthii24.3910.5292.16357forward

Expression of CNT30259423

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VLIHVLLRLIKCSCTKTMEEKLMVELAIFQRYGYVSYY*

>peptide 2 (41 aa)
MFMYENNGREINGGISHFPEIWICFLLLKSRKILIGKKENE*

>peptide 3 (77 aa)
MPADQFTMSSSLTFVKQATWIGQGLLRLMIPRSRSLRSIFFIGASIFTGNSLLIDPAQCPPPSPAAFRPKTKLNLYK*

Sequence

>CNT30259423
TTGTACTGATTCATGTTCTTTTACGCTTGATTAAATGTTCATGTACGAAAACAATGGAAGAGAAATTAATGGTGGAATTAGCCATTTTCCAGAGATATGG
ATATGTTTCTTATTATTAAAATCAAGAAAAATATTAATAGGGAAGAAAGAAAACGAGTAAATTTCTTATTTGAGAGATTTTGAGATTCCATGAGAACTTT
AGTGTCCAAATGTTTTGGAGTACTTGGGGATTATATTCCGCGCCGAGGATTTGTGCTTGTGGGCTAGGGTGAATATTGCAGACCAGCGAAACTGGTGGTC
GACAATCGTTCGGACTTAGTAAAGGTTGTCGCGGCACCTGTAGTAGGACAGAGGACTTATCGCGATGCCCGCGGACCAATTTACGATGTCTTCGTCGCTG
ACGTTCGTCAAGCAGGCCACGTGGATTGGCCAGGGTCTTCTTCGGCTAATGATACCTCGATCCCGAAGCCTTCGGAGTATCTTTTTTATAGGTGCCTCTA
TCTTTACGGGGAATTCGCTGCTGATAGATCCCGCCCAGTGTCCTCCTCCCTCCCCCGCCGCCTTCCGACCGAAAACTAAACTAAATTTATATAAGTAAAT
AAGTTTTATTAAAAATAGAATATTTTATTACAGAAGTACTCAAATTGGATCAGTGATCAATGTGGGTTGTTATCGATGGTTTTGTCCTAAATTATGTTTT
GCATAACTTAACAGAATAATTGCCACCAAAACAATCTATTTCTGTATCATAACTTTCATAGAGTTTAATTTTGTATAAAGTTACACTTTCATTCTATATA
CTCCCTCCGTTTCATTATAAGTGTCACTTAGACACTTTTCACACATATTAAAAAAATGATTGAAATGTATTTATATTCTCATTAATTACATCTAATTGAA
CAATAATATTTGAGATAAACAAGTTTATTTATAGATCAATGAATTTTTATAATTAATATTCAGCTGAAAGTAAATAAAAATTGTATTAGAAATCTAAAAC
GACATTTGTTATGTAATAAGAAAAAAAAACCTAAAATGACACTCTTCAAAAAACATAGGGAGTATCTATCATTTAAAAGTTAAATACTAGTTTCCCATCC
TCTTATACATTAAAAGAGAAGTCACTTTAGTGATTTCTGCTGACATGACATTAATATAGAGCTTCTCAGAAAAATTGTTATAATTCTATTGGTCGATTTT
TTTGAATTTTATTTTTCATTTATTTTAATCAATCGCTTATGTAGACAAGCCCAAAACTATTATCGATTTCGTTAAGCCCATATATAGCTAGGGGATAATA
ATTATCGATTTAGTTTAGCATTGGGCAAGATTTAGAACTAAGACAAATATTAAAAACTTTCCTTATTATTCAAACAGTAAACTTGCGCATGTTGATATCA
TATTAATTACATTTGCTTAGAAAATATTATAATGTTTCTAATTAGTAGGGGTGGGCGTTCGGGT