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Detailed information on CNT3025909


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30207123Populus trichocarpaHelianthus annuus6.5422.2710057forward

Expression of CNT3025909

Peptides detected in this lncRNA

>peptide 1 (89 aa)
TIDHYKSSLISTDRPPPKPTPKQPKHSEAHIPLYARLLLLIQPFLRFGSESPTKERGRPARHDSPGGRWTLSLGKGREGKGRRGLSAYP*

>peptide 2 (48 aa)
HHRPLQIFPHQHRPASTETNPKAAQTQRSPHTPICPPPSLDPAFSSLR*

>peptide 3 (40 aa)
SPSTITNLPSSAQTGLHRNQPQSSPNTAKPTYPYMPASFS*

>peptide 4 (30 aa)
MMPAFSLQLLPHRHRLLPHQPTLLLRFNPM*

Sequence

>CNT3025909
TCACCATCGACCATTACAAATCTTCCCTCATCAGCACAGACCGGCCTCCACCGAAACCAACCCCAAAGCAGCCCAAACACAGCGAAGCCCACATACCCCT
ATATGCCCGCCTCCTTCTCTTGATCCAGCCTTTTCTTCGCTTCGGTAGTGAATCACCTACTAAAGAAAGAGGCAGGCCTGCACGCCACGACTCCCCAGGC
GGGCGGTGGACTCTTTCATTAGGGAAGGGAAGGGAAGGGAAGGGAAGAAGGGGCCTAAGCGCGTACCCTTGAGTGGCAAAGCAAAGAGGGATCGTACCTA
TTTTTCAAGGAGCGCGGAAGATCAAGTCGGTGAGCCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCACTGAATTAGAATGATGCCCGCCTTTTC
CCTCCAGCTCCTCCCCCACAGACATCGTCTCCTTCCTCATCAACCGACTCTCCTTCTCCGGTTCAACCCCATGTAGAAGATCTGGACCGAGACCCAACTG
CTAGATCTGCAGAAGAAAGACAAAAAAAACTAAAACAGACTGCGTGTTACGTTTGCAGGTCACGGTGCCACCGCCAGAGGGAAGGGAAGAGGGGAAGAAG
CCAATCCAGGTCCCCCCGTCCACTGGTTTTTCTTGCGGCGGCGCGTCAACCCAGAAGTTGCCCAGAAATTTCCAGCACTGTTCCCGAGTTCATTTTGTAA
TTTTAAAATGTGTAATTAAATTATTGTTATCATTTTAAATTCTGTTACATTGTAAACTTGTAACTTTGTGTGTGTTTGAACTTTTTATGAATGTTTTTTT
TAATGATAAAACCAAAAAGACAAAGGAAGAATTTAATGCTTTGATTTGCTGTTAAGGATCACGAATTTATAT