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Detailed information on CNT30258743


BLAST search results

BLAST vs Swiss-Prot:
sp|P48684|RBL_AVESA, E-value = 8e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146680Avena sativaMedicago truncatula77.737.2785.87467forward
CNT30681791Avena sativaTriticum urartu74.5476.4597.1448forward
CNT30477847Avena sativaArabidopsis halleri33.2890.9186.5200forward
CNT30622174Avena sativaCajanus cajan64.2353.0287.05386forward

Expression of CNT30258743

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MDTQSWVKKIPRARSFSIKSSRNKSTKPKVISRSPSSLPTTVPEWI*

Sequence

>CNT30258743
ATTAGACGAATAAAGAAGAATTACTGCATTTCGTAACTTATTTTTTCTCTTTTTATTTCGTTTATTTTTTATTTATACCTTCTTTATATTTAGTTTTATC
TATTCATCAATAGTATCTACCGGCTCGAACTCGAATTTGATCGCTTTCCATACTTCACAAGCCGCGGCTAGTTCAGGACTCCATTTGCAAGCTTCTCGGA
TAATTTCATCACCTTCACGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCACCAGGTGCATTTCC
CCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCATCCCCAAAGATTTCAGTCAGAGCTGGCATATGCCAAACATGAATACCACCTGAA
GCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGGGTGAAAAAGATACCGCGAGCACGATCTTTTTCAATAAAATCATCGCGCAATAAATCAACAA
AACCTAAAGTCATTTCGCGTTCCCCTTCTAGCTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCAGACATACGCAATGCTTTAGCTAATACACG
G