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Detailed information on CNT30258698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Avena sativaOryza sativa51.9887.3297.62420reverse complement
CNT30671914Avena sativaSetaria viridis51.9825.2698.33420reverse complement
CNT30641383Avena sativaNymphaea colorata50.9913.1996.12412reverse complement
CNT30550219Avena sativaIpomoea triloba51.499.5897.84416reverse complement
CNT30378673Avena sativaArabidopsis thaliana30.219.5799.18244forward
CNT30619000Avena sativaSesamum indicum50.7413.4296.34410reverse complement
CNT30730480Avena sativaCorchorus capsularis51.4933.2398.08416forward
CNT30632407Avena sativaVigna unguiculata52.2315.6296.68422forward
CNT30505427Avena sativaNicotiana attenuata51.4915.2297.84416reverse complement
CNT30156864Avena sativaPistacia vera42.3323.2594.74342forward
CNT30569654Avena sativaActinidia chinensis51.4911.8896.63416reverse complement
CNT30234026Avena sativaBrassica oleracea41.2183.8895.2333forward
CNT30511493Avena sativaSolanum lycopersicum20.6718.6899.4167forward
CNT30147391Avena sativaMedicago truncatula50.9916.2898.54412forward
CNT30438073Avena sativaAegilops tauschii51.9851.698.81420reverse complement
CNT30140161Avena sativaLolium perenne51.9812.3498.81420reverse complement
CNT30216578Avena sativaKalanchoe fedtschenkoi51.4912.4997.84416reverse complement
CNT30207637Avena sativaHelianthus annuus51.4921.2796.15416reverse complement
CNT30628241Avena sativaDaucus carota51.4915.4197.36416forward
CNT30688989Avena sativaTriticum urartu51.9821.3598.81420reverse complement
CNT30363124Avena sativaSorghum bicolor28.47101.3289.57230reverse complement
CNT30596312Avena sativaOryza meridionalis16.4626.2898.5133forward
CNT30360996Avena sativaLactuca sativa51.4928.5197.84416reverse complement
CNT30429739Avena sativaPapaver somniferum51.3612.993.98415reverse complement
CNT30571858Avena sativaVitis vinifera51.491298.08416forward
CNT30118490Avena sativaCitrus clementina11.5120.9993.5593reverse complement
CNT30103741Avena sativaOryza rufipogon14.1121.6791.23114forward
CNT30550626Avena sativaOryza brachyantha34.2894.5489.53277forward

Expression of CNT30258698

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VSRCAEPELFCSPLGRVFAHFRVFAFREKSVSAPARKRMR*

>peptide 2 (64 aa)
MTRRGILRKGERGEEGAALGPIIQFAPQLAHPHPIQFAPSMVSVVKATSSLSCTHRTAALSGVP*

Sequence

>CNT30258698
GTCAGCAGGTGCGCGGAGCCGGAGCTTTTTTGTTCGCCCTTAGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGAGAGAAATCCGTGTCCGCCC
CAGCAAGAAAACGTATGCGCTAACGCGCAACGGCTTTCCCTTGCTTCAAAACTACAGGTTTTAGCCCTCCGTTTGCTCTTTGAAAGACGAGAGCTTCGCC
TTTGGAAGCGCCAGTAGCGTAGGGCGACCAGCAAACGGAGGGCCTCTGAATTCGTTCTGACGGCTTTGATGACTCGACGGGGAATATTAAGGAAAGGAGA
GCGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCACAATTAGCTCATCCACATCCAATTCAATTCGCTCCGAGCATGGTTTCAGTA
GTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGA
AAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACC
TTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGAAAACTTTCAAGGTCTCGTCGCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCAT
GGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGT
GATTGCTT