« Back to Avena sativa search


Detailed information on CNT30258536


BLAST search results

BLAST vs Swiss-Prot:
sp|P48684|RBL_AVESA, E-value = 6e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226496Avena sativaHordeum vulgare34.2398.2892.11228forward
CNT30627897Avena sativaDaucus carota39.0417.2888.46260forward
CNT30596588Avena sativaOryza meridionalis34.8310094.83232forward

Expression of CNT30258536

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MDTQSWVKKIPRARSFSIKSSRNKSTKPKVISRSPSSLPTTVPEWI*

>peptide 2 (31 aa)
MPNMNTTWHGYPVLGEKDTASTIFFNKIIAQ*

Sequence

>CNT30258536
GCCGAGTTTAATTGCAATCAATTAGACGAATAAAGAAGAATTACTGCATTTCGTAACTTATTTTTTCTCTTTTTATTTCGTTTATTTTTTATTTATACCT
TCTTTATATTTAGTTTTATCTATTCATCAATAGTATCTACCGGCTCGAACTCGAATTTGATCGCTTTCCATACTTCACAAGCCGCGGCTAGTTCAGGACT
CCATTTGCAAGCTTCTCGGATAATTTCATTACCTTCACGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCT
GCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCATCCCCAAAGATTTCAGTCAGAGCTGGCATATGCC
AAACATGAATACCACCTGGCATGGATACCCAGTCCTGGGTGAAAAAGATACCGCGAGCACGATCTTTTTCAATAAAATCATCGCGCAATAAATCAACAAA
ACCTAAAGTCATTTCGCGTTCCCCTTCTAGCTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCAGACATACGCAATGCTTTAGCTAATACACGG
AAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCACGGTGAATGTGAAGAAGT