« Back to Avena sativa search


Detailed information on CNT30258490


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671345Avena sativaSetaria viridis50.6933.7399.73366forward
CNT30702366Avena sativaQuercus lobata50.1436.3598.34362forward
CNT30272552Avena sativaChenopodium quinoa22.8513.1283.03165forward
CNT30730494Avena sativaCorchorus capsularis22.8518.7583.64165forward
CNT30504586Avena sativaNicotiana attenuata50.6920.7898.36366forward
CNT30712072Avena sativaGlycine max27.4231.2394.44198forward
CNT30637481Avena sativaCapsicum annuum30.3348.8896.35219forward
CNT30306129Avena sativaTriticum aestivum50.6929.498.91366forward
CNT30221833Avena sativaHordeum vulgare50.6926.8197.54366forward
CNT30384972Avena sativaTriticum turgidum50.6959.1399.18366forward
CNT30569655Avena sativaActinidia chinensis50.6910.2897.81366forward
CNT30508923Avena sativaSolanum lycopersicum21.4746.4198.71155forward
CNT30147396Avena sativaMedicago truncatula50.6912.397.27366forward
CNT30441199Avena sativaAegilops tauschii50.6936.8699.18366forward
CNT30202530Avena sativaHelianthus annuus50.6949.9397.54366forward
CNT30718256Avena sativaMalus domestica golden20.2247.7191.1146forward
CNT30682011Avena sativaTriticum urartu50.6937.5498.91366forward
CNT30620564Avena sativaCajanus cajan22.853.1983.64165forward
CNT30354697Avena sativaLactuca sativa22.8523.3783.64165forward
CNT30369921Avena sativaOryza glumipatula21.8868.799.37158forward
CNT30571801Avena sativaVitis vinifera50.6928.0598.63366forward
CNT3057237Avena sativaAmborella trichopoda45.9824.0693.67332forward
CNT30320583Avena sativaAsparagus officinalis26.1817.2398.94189forward
CNT30118993Avena sativaCitrus clementina17.0434.9497.56123forward
CNT3038324Avena sativaCucumis melo50.6919.4198.36366forward
CNT30557400Avena sativaPanicum hallii50.6926.6896.99366forward

Expression of CNT30258490

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKVVRELGLERRETVRFLSTVGVKGRTARSQP*

>peptide 2 (34 aa)
TDQRYAGDNRLMTPKSSYRRSRLAPRCRLITSWG*

Sequence

>CNT30258490
ACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGG
GTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGG
TGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGGGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCA
GCTAAGTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGC
AGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACACCCGGTACACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCT
CCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCG
AACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTAT
CCCCGGCGTACCTTTGATCCGT