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Detailed information on CNT30258429


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30436135Avena sativaAegilops tauschii58.0877.4486.09302forward
CNT30685518Avena sativaTriticum urartu57.567.1986.62299forward
CNT30597252Avena sativaOryza meridionalis56.3564.480.89293forward
CNT30104436Avena sativaOryza rufipogon55.5852.9381.31289forward

Expression of CNT30258429

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGR*

>peptide 2 (35 aa)
MCMCSELYNQHSTYIHNCMEPEVKPRKESRQQKVN*

Sequence

>CNT30258429
CAGAAAATAAAGAAACTTTCCATCAATTAACAATAAGATAATAGTCTGCCGTTTGTATATAAATATACATGTGTATGTGTAGCGAGTTATACAATCAACA
TAGTACATACATACACAATTGTATGGAACCTGAAGTAAAACCCCGAAAGGAGAGTCGTCAACAGAAAGTGAACTAACATGCCTTGCGTAGTCGGTTATAT
TCCCAGGTCGCGGCTTATGCCTTGCCGGACTCCTCGCAGCCTGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGGATGTTGTCGAAGCCGA
TGATGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCCTTGATCACCTGTGAGGCGTCGATGAAGCCAACCTTGCTGAACTCGAGGCA
AGGAACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGAGAGCCTCCTCTGAGAGTGGTGGCAGGTAAGACAGGGTCTCGAACTTCTTGATGCCC
TCAATAGGCCACACCTGAAT