Detailed information on CNT30258377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677121Avena sativaSetaria viridis12.0220.6590.2482forward
CNT30183781Avena sativaSecale cereale71.4171.383.37487forward
CNT30295231Avena sativaTriticum aestivum71.1192.3884.33485forward
CNT30392448Avena sativaTriticum turgidum67.1688.0883.62458forward
CNT30662351Avena sativaTriticum dicoccoides71.1191.3484.33485forward
CNT30103845Avena sativaOryza rufipogon18.3328.0388.8125forward
CNT30578311Avena sativaOryza barthii17.8927.2386.89122forward

Expression of CNT30258377

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DFFYHTTYTNGTSPPPLLLLQLNLIILILPDHNIL*

>peptide 2 (48 aa)
MPMPPIGGMPIPPIGGGPPMPGGAGKARGSNWAYMFCVTKSKLVMLSA*

>peptide 3 (64 aa)
MPNWNTLSSFPSEASRMQASDQDPLEACPCRPSEACPFRPSEEDRPCQVEQARREGAIGHTCSV*

>peptide 4 (93 aa)
MFFKCQTGTPSVASHRRHPVCRHRTRTHWRHAHAAHRRHAHSAHRRRTAHARWSRQGEREQLGIHVLCNKIQTCHAVCLSMSCGMLNQERIAL*

>peptide 5 (32 aa)
RLLLSHNLYKWYQSSASPSSSAQPNHPHPTRP*

Sequence

>CNT30258377
CAGACTTCTTTTATCACACAACCTATACAAATGGTACCAGTCCTCCGCCTCTCCTTCTTCTTCAGCTCAACCTAATCATCCTCATCCTACCCGACCATAA
TATACTGTAACCAGTAAATTTACTCGGTACCTCGGCTAGGGGTATTGCTCGCCAAAATTGTTGTCCTGGTACCAAAAGAATATTAATCGAAAAACCAATA
GCCCAAATCTACAACTTCAAAGATACCTCGGGATCAGCGTGCTTCCCATCTGTGTAAACTGAAACAATCAACATCATCTATGTTCTTCAAATGCCAAACT
GGAACACCCTCAGTAGCTTCCCATCGGAGGCATCCCGTATGCAGGCATCGGACCAGGACCCATTGGAGGCATGCCCATGCCGCCCATCGGAGGCATGCCC
ATTCCGCCCATCGGAGGAGGACCGCCCATGCCAGGTGGAGCAGGCAAGGCGAGAGGGAGCAATTGGGCATACATGTTCTGTGTAACAAAATCCAAACTTG
TCATGCTGTCTGCTTAAGCATGAGCTGCGGGATGTTAAACCAAGAAAGAATAGCACTTTAAGATTACCTGCTGAGCAACAACGTCCTTCTCTTCCTGCTC
TTTAGCTTTTTCTTCTTTCTGTGATTCAATCCTGTCCTTTACCAAGTCATCTACCTTGCTTGTGTACTCACGGATGTACTGC