CANTATAdb - search

Detailed information on CNT30258042

BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30180392	Avena sativa	Secale cereale	58.55	20.54	87.25	298	forward

Expression of CNT30258042

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGK*

Sequence

>CNT30258042
AACAGATAGAATCCTTCGCATAAATCAGAAACCTCATTTGCATTGCCTGGGTTAATCAACGAAGACAATCTAAGAAGGAACAGACTTTACCCAAGCCTGC
GATTGTTCATCGCCCTATTATATGGAACCAGAAGTAAAACCTCAAAATCAGAATTGTCGACAAATTTGAACAAGACACTTCATAGAGCATCTGTTATTCC
CAGCTCGCGGCTTAGGCCTTGCCGGACTCCTCACAACCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACTTGGCGGATGTTGTCGAAGCCGATGA
TGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCCTTGATCACCTGTGAGGCGTCGATGAAGCCAACCTTGCTGAACTCGAGGCAGGG
AACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGAGGGCCTCCTCTGAGAGTGGTGGCAAATAAGAAAGGGTCTCGAACTTCTTGATGCCCTCA
ATCGGCCAC