Detailed information on CNT3025796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT001132, E-value = 7e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200548Populus trichocarpaPisum sativum19.8627.3392.0588forward
CNT30502101Populus trichocarpaNicotiana attenuata44.4741.9186.8197forward
CNT3091075Populus trichocarpaSolanum tuberosum35.2141.1689.1156forward
CNT30332063Populus trichocarpaDioscorea rotundata45.1548.7882.5200forward

Expression of CNT3025796

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MQIKHNYKFNSNHVLNKDNPCSILRKKSHSNELNHHQPSGKHR*

>peptide 2 (97 aa)
MSLITTSRLVNIGKPTLTTVVPIKMISHESPSTALSIRALLPQPLDFAAIINLIELEHSELDLLLLVLDLLGLGVGLHEDLHLRFLGVFGDAERIGKS

Sequence

>CNT3025796
TCAAGCACAAAGGCAGACAATATAAAACAAAAATATAATTAAACTCAAAATTAGCCATGCAAATAAAACATAACTATAAGTTCAACAGCAACCATGTTCT
AAATAAAGATAATCCTTGTTCCATACTTAGGAAAAAAAGCCATTCAAATGAGCTTAATCACCACCAGCCGTCTGGTAAACATAGGTAAGCCCACACTTAC
CACAGTAGTGCCTATCAAAATGATTAGCCATGAAAGTCCCAGCACCGCACTCAGCATTAGGGCACTCCTTCCTCAACCTCTGGACTTTGCCGCTATCATC
AACCTTATAGAACTGGAGCACAGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCACGAAGATCTGCATCTTCGCT
TCTTGGGGGTTTTTGGAGATGCAGAGCGGATAGGGAAGAGTAG