Detailed information on CNT30257804


BLAST search results

BLAST vs Swiss-Prot:
sp|A1EA47|RR3_AGRST, E-value = 2e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503443Avena sativaNicotiana attenuata33.3865.0981.82220forward
CNT3047594Avena sativaPrunus dulcis38.0935.7580.88251forward
CNT30224357Avena sativaHordeum vulgare99.743.5194.37657forward
CNT3086712Avena sativaVigna radiata13.229.1987.3687forward
CNT3018340Avena sativaZea mays44.9222.2291.55296forward
CNT30713541Avena sativaMalus domestica golden8.6526.5189.4757reverse complement
CNT30371107Avena sativaOryza glumipatula64.64100.9591.55426forward
CNT30604560Avena sativaOryza punctata83.6154.7292.74551forward

Expression of CNT30257804

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MHSARAISFPPRRPAILTLTPLISAFLVNSMAFFIAFRNETLFFNWKAIYSARMLGSL*

>peptide 2 (51 aa)
LSIAIILNDLSIFIKSYRKKEVEFLVFFRDFRKKSLLSFFILSLDRMRRED*

Sequence

>CNT30257804
ACTAAGCATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAAAGAGGTAGAATTTCTTGTTTTTTTCAGGGATTTCAGGAAA
AAAAGTCTCTTGTCATTTTTTATTCTATCACTGGACAGAATGCGAAGAGAAGATTAGTTATTCTTCGTCTACGAATATCCAAAATTTTACACCTAATACT
CCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGGAGTCTACCCTTTTTGATGCATTCGGCACGTGCAATTT
CTTTTCCTCCGAGACGACCCGCAATTTTGACTTTGACTCCCCTTATATCCGCTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAAC
TCTATTTTTTAATTGGAAAGCTATATATTCTGCCAGAATGTTAGGTTCTCTATAAGGCTCTTTCACTTTTTCGATAGAAATATTAAGTCTTTGGTTTACG
GAGTGAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCGATTACTCCTTTTTTTCTTTAATAAATTAGGGAATCCAATATGGATTATGACGTGGATCGTA
TCGATTTCTTTTTGAATTTCTATACGTGTAATTACTTCAGAACTTGAACCTGAGTCCGT