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Detailed information on CNT30257738


BLAST search results

BLAST vs Swiss-Prot:
sp|P00871|RBS1_WHEAT, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555732Avena sativaOryza glaberrima75.4442.1180.59510forward
CNT30657614Avena sativaTriticum dicoccoides73.9674.8585.6500forward

Expression of CNT30257738

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLAEDEANLAELEAGNPLGADQEVDLLQEGLL*

>peptide 2 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGK*

>peptide 3 (31 aa)
MLAEDEANLAELEASVQPNMGSFHIVQYLPS*

>peptide 4 (33 aa)
ICIAWVNQRRQSKKEQTLPKPVIVHRPIIWNQK*

>peptide 5 (38 aa)
MKPTLLNSRRQCSRTWAASTLSSTCRHSIQECCHARGR*

Sequence

>CNT30257738
ATTTGCATTGCCTGGGTTAATCAACGAAGACAATCTAAGAAGGAACAGACTTTACCCAAGCCTGTGATTGTTCATCGCCCTATTATATGGAACCAGAAGT
AAAACCTCAAAATCAGAATTGTCGACAAATTTGAACAAGACACTTCATAGAGCATCTGTTATTCCCAGCTCGCGGCTTAGGCCTTGCCGGACTCCTCGCA
ACCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACTTGGCGGATGTTGTCGAAGCCGATGATGCGGACATAGGCGTCAGGGTACTCCTTCTTGACC
TCCTCCACCTCCTTGATGACCTGTGAGGCGTCAGTGCAGCCGAACATGGGCAGCTTCCACATTGTCCAGTACCTGCCGTCATAGTATCCAGGAGTGCTGC
CATGCTCGCGGAAGATGAAGCCAACCTTGCTGAACTCGAGGCGTCAGTGCAGCCGAACATGGGCAGCTTCCACATTGTCCAGTACCTGCCGTCATAGTAT
CCAGGAGTGCTGCCATGCTCGCGGAAGATGAAGCCAACCTTGCTGAACTCGAGGCAGGGAACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGA
GGGCCTCCTCTGAGAGTGGTGGCAAGTAAGAAAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAAT