Detailed information on CNT30257732


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711335Avena sativaGlycine max52.2136.2295.07142forward
CNT30384181Avena sativaTriticum turgidum10041.72100272forward
CNT30552256Avena sativaOryza glaberrima66.9170.27100182forward
CNT30437708Avena sativaAegilops tauschii44.4938.78100121forward
CNT30266045Avena sativaBrassica rapa95.2258.4798.46259reverse complement
CNT30715515Avena sativaMalus domestica golden65.0788.0684.18177reverse complement
CNT30352524Avena sativaEragrostis tef5032.4698.53136forward

Expression of CNT30257732

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SARFHVLFHYPLGVLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 2 (32 aa)
LSTVSRSISLPTGGSFHLSLTVLLRYRSPRSI*

>peptide 3 (40 aa)
AQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQGGPC*

Sequence

>CNT30257732
GCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG
CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTA
GCCATCTAGGGTGCGGCACTCAACCGCTTCGCCTAGCAGCACAACGCTTGTATTGCTCTCCCACAACCCCGT