Detailed information on CNT30257701


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENY0|PSBC_SACOF, E-value = 2e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201936Avena sativaPisum sativum74.9358.8290.96520forward
CNT30563336Avena sativaActinidia chinensis16.5756.9392.17115reverse complement
CNT30236105Avena sativaBrassica oleracea94.3879.7890.38655forward
CNT30607747Avena sativaGossypium raimondii37.6165.4186.59261forward
CNT30628236Avena sativaDaucus carota79.8350.9790.79554forward
CNT30367840Avena sativaSorghum bicolor45.9771.0596.87319forward
CNT30148338Avena sativaBrachypodium distachyon14.724.8898.04102forward
CNT30116778Avena sativaOryza nivara64.8468.3996450forward

Expression of CNT30257701

Peptides detected in this lncRNA

>peptide 1 (30 aa)
ISIFPYITKKWKRFFKSLGSQKRVINATET*

>peptide 2 (62 aa)
YFYLSIHNQKMEKILQESRVPEARDKCHRNLRLRRKLGEVLQIQSTEKYLELLPLALLPNLE*

Sequence

>CNT30257701
TATTTCTATCTTTCCATACATAACCAAAAAATGGAAAAGATTCTTCAAGAGTCTCGGGTCCCAGAAGCGCGTGATAAATGCCACCGAAACCTAAGACTGC
GGAGGAAATTAGGTGAAGTACTCCAGATACAAAGTACGGAAAAGTATCTAGAACTTCTCCCCCTGGCCCTACTCCCCAACCTAGAGTAGCTAAGTGTGGA
AGTAAAATTAACCCTTGTTCATACATGGGCTTTTCTGGTACGAAATGAGCCACCTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTTATCCGGCAT
GGGCTACGTGAGCTCCAAGTAGCTTACCGGACAAATTGATAAGTCTGGCATTCCCAGCCCACCAAGCAAAGCCAGTGGTTTCTTGGTCACGACCAGCTAA
AACGAAAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTGAGCTGCCATCCAAGCACGAAT
ACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAAGTTC
AGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAG