« Back to Avena sativa search


Detailed information on CNT30257651


BLAST search results

BLAST vs Swiss-Prot:
sp|P48684|RBL_AVESA, E-value = 2e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678101Avena sativaSetaria viridis41.2165.9193.53232forward
CNT30435662Avena sativaAegilops tauschii33.7559.5696.84190forward
CNT30480921Avena sativaChara braunii40.53082.89228forward
CNT30323704Avena sativaAsparagus officinalis52.2298.9991.5294forward

Expression of CNT30257651

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDKLHNRSIGCLPQQQARCDSIVLCNDQDW*

>peptide 2 (45 aa)
YIPIKDDHTCSTYLFQLGYHEADLGKFLYKQGEFVDPPDVEHVGL*

Sequence

>CNT30257651
GTACATCCCAATAAAGGACGACCATACTTGTTCAACTTATCTCTTTCAACTTGGATACCATGAGGCGGACCTTGGAAAGTTTTTGTATAAGCAGGGGGAA
TTCGTAGATCCTCCAGACGTAGAGCACGTAGGGCTTTGAAACCAAATACGTTACCCACAATGGAAGTAAACATGTTAGTAACGGAACCCTCTTCAAATAG
GTCTAATGGATAAGCTACATAACAGATCCATTGGTTGTCTTCCCCAGCAACAGGCTCGATGTGATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGT
CCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCAGCCCCTGCTTCTTCCGGCCGAACCCCAGGTTGAGGAGTTACTCGGA
ATGCTGCCAAGATATCAGTATCCTTGGTTTCATACTCCGGGGTGTAGTAAGTCAATTTATAATCTTTAACACCAGCTTGAAATCCAACACTTGCTTTAGT
TTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCTTGAATTAAGAATTCTCACAATAACA