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Detailed information on CNT30257501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187105Avena sativaSecale cereale10077.299.52623forward
CNT30679693Avena sativaTriticum urartu10061.299.52623forward
CNT30585670Avena sativaEchinochloa crusgalli93.7461.0999.32584forward

Expression of CNT30257501

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPTRDRRMLLIGLRRHLMRNQSLWVPGGVWSQG*

>peptide 2 (34 aa)
MPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG

>peptide 3 (63 aa)
LVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPDIARIDRLRALS*

>peptide 4 (38 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEPSLRS*

Sequence

>CNT30257501
TCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGG
GGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTAT
GGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCA
TCCCTCCGCAGCTAGCTTCTTAGAGGGACTATCGCCGGTTAGGCGCCGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCA
CGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
GTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTG
AATGGTCCGGTGAAGTGTTCGGA