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Detailed information on CNT30257373


BLAST search results

BLAST vs Swiss-Prot:
sp|P48684|RBL_AVESA, E-value = 3e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Avena sativaOryza sativa99.414.2996.82660forward
CNT30678279Avena sativaSetaria viridis36.1427.9797.5240forward
CNT30201083Avena sativaPisum sativum99.8531.0586.43663forward
CNT30194485Avena sativaSecale cereale10072.4198.04664forward
CNT30290182Avena sativaTriticum aestivum10035.0298.04664forward
CNT30225281Avena sativaHordeum vulgare45.7890.7596.38304forward
CNT30434683Avena sativaAegilops tauschii67.7775.6397.56450forward
CNT3060115Avena sativaArabidopsis lyrata99.8527.9686.43663forward
CNT30265852Avena sativaBrassica rapa15.5123.5784.47103forward
CNT302912Avena sativaZea mays75.662.6795.82502forward
CNT30606537Avena sativaGossypium raimondii86.634.2181.91575forward
CNT30687498Avena sativaTriticum urartu96.9947.4298.14644forward
CNT30477828Avena sativaArabidopsis halleri30.8740.2888.78205forward
CNT30595572Avena sativaOryza meridionalis58.5845.3996.14389forward
CNT30355674Avena sativaLactuca sativa64.1657.7288.5426forward
CNT3058691Avena sativaAmborella trichopoda49.773.8386.97330forward
CNT30100001Avena sativaOryza rufipogon38.198.0697.63253forward
CNT30578317Avena sativaOryza barthii29.2240.0895.88194forward

Expression of CNT30257373

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TRLAAAPGAFPQGCPKVPPPNCNTESSPKISVRAGICQT*

>peptide 2 (30 aa)
MPLNFTGFGLCFINSFGTKDKTVSPTHKWL*

>peptide 3 (46 aa)
MDTQSWVKKIPRARSFSIKSSRNKSTKPKVISRSPSSLPTTVPEWI*

Sequence

>CNT30257373
CACTCGATTAGCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCATCCCCAAAGATTTCAGTCAGA
GCTGGCATATGCCAAACATGAATACCACCTGAAGCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGGGTGAAAAAGATACCGCGAGCACGATCTT
TTTCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAGCTTACCTACTACTGTACCGGAGTGGATATGATCTCC
CCCAGACATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCACGGTGAATGTGAAGAAGT
AGGCCATAGTCGCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCCCCCAGTTATGTAGTCATGCATTACAATAGGAACCCCTAATTCTCTCGCAA
ATACAGCTCTCTTAATCATTTCTTCACATGTACCTGCAGTCGCATTCAAGTAATGCCCCTTAATTTCACCGGTTTCGGCCTGTGCTTTATAAATAGCTTC
GGCACAAAAGACAAAACGGTCTCTCCAACGCATAAATGGTTGTGAGTTTACGTTTTCATCATCT