Detailed information on CNT30256907


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30344611Avena sativaEragrostis tef48.2516.9787.68138forward
CNT30579836Avena sativaEchinochloa crusgalli77.9764.6488.34223forward
CNT30497331Avena sativaDigitaria exilis77.9724.5983.86223forward

Expression of CNT30256907

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MVTRPEVVVAEATQNRDRDDGASRLGTPTALQLLSPLDAIAALSMLLLAALPTRTRRKNR

>peptide 2 (36 aa)
EHGPAAVVDLGLLEPLEVRRHGGRGGAGPGTTPRTW*

Sequence

>CNT30256907
CGAGCATGGCCCAGCGGCAGTGGTAGATCTCGGACTCCTTGAACCGCTCGAAGTTCGCCGGCACGGTGGGCGGGGCGGGGCTGGCCCGGGAACCACTCCG
CGGACATGGTGACGCGGCCGGAGGTGGTGGTGGCGGAGGCGACGCAGAACCGGGACCGGGACGACGGAGCCAGCAGGCTCGGCACGCCCACGGCGCTGCA
ACTCCTCAGCCCGCTCGACGCCATTGCTGCTCTCTCGATGCTGCTTCTTGCTGCGCTACCAACAAGAACAAGAAGGAAGAATAGGC