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Detailed information on CNT30256420


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 9e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671301Avena sativaSetaria viridis13.6726.2188.0492forward
CNT30296754Avena sativaTriticum aestivum40.8639.7484275forward
CNT3016391Avena sativaZea mays12.0422.0786.4281forward

Expression of CNT30256420

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LHCFHEMQQQHLKLLTILDLDVHLSTLACGPSSFALTNIS*

>peptide 2 (86 aa)
MSRGTLRWTMSRTLALTAVQRQTAASMSTNPRSSGQHSSYAGIPTLMRPSSPPRTLAHTLSLSTSMEHCPLCPPPPLYGGGGTATGG

Sequence

>CNT30256420
CTTTGCATTGCTTTCACGAGATGCAACAACAACACCTTAAATTATTGACCATACTAGATTTAGATGTGCACCTAAGCACCTTGGCGTGTGGCCCCTCATC
TTTCGCATTGACGAATATTTCATAAAACATATCACATAATAAGCTAAGACAAAACAAAGAGAACATGTAAACATAATTACTGAAACCAGAAGAAAATTAA
AACAGATTAGTATAACCGGGCATGTCAAAAGCAACAAAATAGGTGAACTGAAGAGGCTACAAACAACCTCTTACGGGTATTACACAAGTGGGTACCAATT
TTGGCTGACATATGTTACAACATACAAAACATATCAAAAAAATAGCTTAATGGGCTGAGCAAGTGAAATCAGACGGGCACGTCTTGCCGCAGTGGTTGAG
GAGGAGGGTGATGTCTAGAGGGACGCTAAGGTGGACGATGTCGAGGACGTTAGCCTTGACGGCGGTGCAGAGACAGACAGCGGCGTCGATGTCGACCAAC
CCCCGCAGCAGCGGGCAGCACTCGTCGTACGCCGGAATCCCGACATTGATGAGGCCGAGCAGCCCGCCGAGAACGTTGGCGCACACCCTCAGTTTGAGCA
CATCGATGGAGCACTGCCCGCTGTGCCCTCCTCCTCCATTGTATGGTGGCGGCGGAACAGCGACGGGTGGCTG