Detailed information on CNT30256287


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223766Avena sativaHordeum vulgare42.9638.3587.1186forward
CNT30390880Avena sativaTriticum turgidum68.3659.6886.49296forward
CNT30137065Avena sativaLolium perenne43.4241.1492.55188forward
CNT30721254Avena sativaTriticum spelta41.832.587.85181forward

Expression of CNT30256287

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MQLIIDKATAADGQLTASSQAGRPLGAWMKKPSMENMASRPFLISFTLSSAAWSGSVAR

>peptide 2 (44 aa)
YRLPKLLGPNQSSFQSSIWFLTMTKTISEITQIKDQCSSTARAA*

>peptide 3 (91 aa)
MFLPTLIIYTYCTFVLLTLFPVKLTQHIMLHCTHAADHRQSDGGGRATDGELTGWASSRRLDEETQHGEHGQPSVLDLLHLEQRRLVGVGGE

>peptide 4 (39 aa)
MIDHVSSDLDNLHVLHIRTLDTFPGKINTAHHAALHACS*

Sequence

>CNT30256287
ATACCGTTTGCCCAAGCTATTGGGGCCTAATCAATCAAGTTTCCAATCGTCAATCTGGTTCTTAACGATGACGAAAACTATTTCAGAAATTACTCAAATT
AAGGATCAGTGTAGCAGCACTGCTCGGGCAGCATAAGAAATCAGAATGATCGATCATGTTTCTTCCGACCTTGATAATTTACACGTACTGCACATTCGTA
CTCTTGACACTTTTCCCGGTAAAATTAACACAGCACATCATGCTGCATTGCACGCATGCAGCTGATCATCGACAAAGCGACGGCGGCGGACGGGCAACTG
ACGGCGAGCTCACAGGCTGGGCGTCCTCTCGGCGCCTGGATGAAGAAACCCAGCATGGAGAACATGGCCAGCCGTCCGTTCTTGATCTCCTTCACCTTGA
GCAGCGCCGCCTGGTCGGGGTCGGTGGCGAGGC