CANTATAdb - search

Detailed information on CNT30256262

BLAST search results

BLAST vs Swiss-Prot:
sp|P84563|PSAD_POPEU, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30122581	Avena sativa	Physcomitrium patens	41.91	33.05	81.12	233	forward
CNT30440643	Avena sativa	Aegilops tauschii	47.48	54.77	95.83	264	forward

Expression of CNT30256262

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGRAAGARSRRGRGRPRVPWWPAPASPRRRRRAGPGRGDEVARGRRGLRGHGHGGGGGGGGG*

>peptide 2 (45 aa)
MRWRVAAEACVAMAMAEAVAEAVARWFLATGGRERPHARAGEWCR*

>peptide 3 (69 aa)
DAAEVLADALPAGVDLLRVDAVLGVEVLHLAVGEDAVELVCDLVLGAEPVAEGETLLLAGELEEVGVMT*

Sequence

>CNT30256262
CGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGG
GAAGACGCGGTAGAACTGGTATGCGATCTTGTACTTGGAGCGGAGCCTGTTGCCGAGGGCGAGACACTGCTCCTTGCGGGCGAGCTTGAGGAGGTTGGGG
TGATGACGTAGAACTCCTCGACCTGCGCCTTGCGGAGGAGCCCGCCCGTGCTGCCGCCGAAGATCGGGGAGGGCGTGGATGGGTCGAGCTGCGGGGGCAC
GAAGCCGGCGGGGGCGGGGGCGGCCTCGGGTTCCTTGGTGGCCGGCGCCGGCGAGTCCGAGGCGGCGGCGCAGAGCGGGGCCGGGCCGCGGTGATGAGGT
GGCGCGTGGCCGCCGAGGCTTGCGTGGCCATGGCCATGGCGGAGGCGGTGGCGGAGGCGGTGGCTAGGTGGTTCTTGGCAACGGGAGGACGGGAGAGGCC
ACACGCGCGCGCGGGAGAGTGGTGCCGATGAGTGTGATTATGGATGGACGGGTGAT