Detailed information on CNT30256205


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Avena sativaOryza sativa9.356.8684.48116forward
CNT30523179Avena sativaSetaria italica15.4869.9382.9193forward
CNT30552628Avena sativaOryza glaberrima9.324.0286.21116forward
CNT30349956Avena sativaEragrostis tef15.0872.5982.98188forward
CNT30596024Avena sativaOryza meridionalis9.343.1283.62116reverse complement
CNT30370879Avena sativaOryza glumipatula9.350.2283.62116reverse complement
CNT30102419Avena sativaOryza rufipogon9.338.5485.34116reverse complement
CNT30576113Avena sativaOryza barthii7.9438.8286.8799reverse complement

Expression of CNT30256205

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIDMIPIPTSCNFFLEAHPKRTFRLSVFGVEKYEDE*

>peptide 2 (96 aa)
MVSSSSCLFRALMWRGRRRSINASSVGRRIWLFSPVAVVAHLRCLWSLWFYFLHKAVSLPCGGRGDWLRRSSTMCMGHACEIVLAVACEILTHVLI*

>peptide 3 (48 aa)
FFRALVTHACSMDFVFSGVAAVLKLLAAGIGVAMGDNCVTAGDDLGIF*

>peptide 4 (35 aa)
FSCFGHSRMLHGFCVFRRGCGTEAARCWDRGGHGR*

>peptide 5 (33 aa)
MLSGVTPSGPGGRGVTSVRVSGGHVEYGTLACG*

>peptide 6 (35 aa)
MRMSDRPGSYSRVCTSEDKIRRKDKCWSMRPVLRS*

Sequence

>CNT30256205
TTTTTTCGTGCTTTGGTCACTCACGCATGCTCCATGGATTTTGTGTTTTCAGGCGTGGCTGCGGTACTGAAGCTGCTCGCTGCTGGGATCGGGGTGGCCA
TGGGCGATAATTGTGTTACTGCTGGCGACGATCTAGGTATATTCTGAAACAAAATTTCCCTGGCGTTGGTTTTCTTTGCTCGTGTTTTCTCTTTTTCTTT
GTGCTTTCAGACGTTGTTACCGTGCCGACTTTACTTGCTGTTGGAACCCGTCTGGCCGCCTGCGACGATCCAGGTTTTGTGGTACTGCTTGTTTTCGGCT
ATGGTTTCATCTTCTTCGTGTCTTTTTAGGGCTCTTATGTGGCGTGGGCGCCGGAGATCTATTAACGCGTCGTCGGTGGGGCGACGAATATGGCTATTTT
CTCCTGTTGCTGTTGTTGCCCATCTTCGATGTCTATGGTCTCTTTGGTTCTATTTTTTGCATAAAGCAGTGTCTTTACCGTGCGGTGGTCGTGGAGATTG
GCTAAGGCGTAGCAGTACTATGTGCATGGGGCACGCGTGTGAGATTGTGCTTGCGGTGGCGTGTGAGATCCTAACGCATGTCTTAATATGATTGATATGA
TACCCATACCAACAAGTTGTAACTTTTTTCTGGAAGCTCATCCAAAAAGAACCTTCAGGTTAAGCGTGTTTGGCGTAGAGAAATATGAGGATGAGTGACC
GACCGGGAAGTTATTCCCGAGTGTGCACTAGTGAGGACAAAATACGCAGAAAAGATAAGTGTTGGTCTATGAGACCAGTCTTGAGATCCTAGTATGTTGT
CAGGAGTGACACCCTCGGGGCCTGGTGGACGGGGTGTTACAAGTGTACGGGTCAGTGGCGGACATGTGGAGTATGGCACATTGGCTTGTGGTTGATCGAC
GAGGGCGTCTATCTTCTAAGGATGGGTGTATGTGAGATCCTGACGCATGGTTTAATAGGATTGAGAGGACACTCGTACCAATAATTTGCAACTTCTTTTT
CGAAACCTCATCCAAAAAAATCCTCTAGGTTAAGCGTGATTGGCCTGGAGCAATTTGAGGTTAGGTGAAGTTGTTTGCAGGTGCACACGAGTGAGGACAA
AGTGCGCATAAAAGACAAGTATTGGTCTGCGGGGCTAGTCTAGAGATCCTATTAAGTTGCCATGAGTGACACCCCCGGGCATGGTGGACGGGATGTTACA
AGGTGAAAGGAAAATAGACGTTGCCTAGAGAGGGGGTGAATAGGCGT