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Detailed information on CNT30256161


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677847Avena sativaSetaria viridis44.3845.1994.12221forward
CNT30135596Avena sativaLolium perenne58.0377.4896.89289forward

Expression of CNT30256161

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MKQQQIHSFIHPYATDSMTGYRPSTPINESLTTLSIRLPDGNTRRDLRLSLQSRRGCVPGA*

>peptide 2 (54 aa)
YEATTNPFIHSSICNRFHDRLQAIHPNQRKPNNPKHPTTRWEHSKGSEAQPPKP*

>peptide 3 (51 aa)
MRFTPPRRARRRIAGLVMPWMLSRRTLRWRLAPPLPRPLPPLPRPDIACWR*

Sequence

>CNT30256161
GTATGAAGCAACAACAAATCCATTCATTCATTCATCCATATGCAACAGATTCCATGACAGGTTACAGGCCATCCACCCCAATCAACGAAAGCCTAACAAC
CCTAAGCATCCGACTACCAGATGGGAACACTCGAAGGGATCTGAGGCTCAGCCTCCAAAGCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGA
CGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCC
GCCACGGCGAGCGAGGCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGGACCTTGCGGTGGCGCTTGGCGCCGCCCTTGCCCAGACCC
TTGCCTCCCTTGCCGCGGCCCGACATTGCTTGCTGGCGATGAGAGCAGAGGAGCTCGGAGAAGAACAGGTGGAGATTGGGGAATTTTTCCAGGTGTGT