Detailed information on CNT30255921


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703567Avena sativaQuercus lobata42.5347.3384.1239forward
CNT30375418Avena sativaArabidopsis thaliana15.6637.2987.588forward
CNT3069058Avena sativaQuercus suber39.8625.683.48224forward
CNT3086297Avena sativaVigna radiata51.624.9484.14290forward
CNT30357929Avena sativaLactuca sativa42.5353.3582.01239forward
CNT3024855Avena sativaPopulus trichocarpa43.0641.2381.82242forward
CNT30331117Avena sativaDioscorea rotundata54.2732.2181.64305forward

Expression of CNT30255921

Peptides detected in this lncRNA

>peptide 1 (71 aa)
IYSSFHLYQHKSSIQQHQSSMKQRPNPSIHPYATDSIRDYSTSTTEDLTTLSIQLPDENTLKGSEAQPPKP*

>peptide 2 (57 aa)
NLLFVSFISAQIKYPATPIKYETKTKSIHSSICNRFHQRLQYIDHRRPNNPKHPTTR*

Sequence

>CNT30255921
AATTTACTCTTCGTTTCATTTATATCAGCACAAATCAAGTATCCAGCAACACCAATCAAGTATGAAACAAAGACCAAATCCATCCATTCATCCATATGCA
ACAGATTCCATCAGAGATTACAGTACATCGACCACAGAAGACCTAACAACCCTAAGCATCCAACTACCAGATGAGAACACTCTGAAGGGATCTGAGGCTC
AGCCTCCGAAGCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGAGCGTGCTCGGTGTAGGTGAC
GGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACACCGCCACGGCGAGCGAGA
CGCCGGATGGCGGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGGACCTTGCGGTGACGCTTGGCGCCGCCCTTGCCCAGACCCTTGCCTCCCTTGCCGC
GGCCCGACATTGCTTGCTGGCGATGAGAGGAGAGGTCAGAGAAGACGAGGTGGGGATTGGGG