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Detailed information on CNT3025558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT001953, E-value = 2e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281672Populus trichocarpaChenopodium quinoa26.1789.4591.98212reverse complement
CNT30201820Populus trichocarpaPisum sativum24.3235.1897.97197forward
CNT30223508Populus trichocarpaHordeum vulgare45.9362.2191.94372reverse complement
CNT30234846Populus trichocarpaBrassica oleracea6.7922.9292.7355forward
CNT30553994Populus trichocarpaOryza glaberrima86.5498.5989.59701forward
CNT30229065Populus trichocarpaAnanas comosus37.4182.7991.42303forward
CNT30627892Populus trichocarpaDaucus carota71.7395.495.35581forward
CNT30153321Populus trichocarpaPrunus persica60.49101.0396.33490reverse complement
CNT30425623Populus trichocarpaPapaver somniferum17.7831.5895.14144forward
CNT3053197Populus trichocarpaAmborella trichopoda29.1414.7792.37236forward
CNT3036892Populus trichocarpaCucumis melo20.7415.4196.43168forward
CNT30150988Populus trichocarpaBrachypodium distachyon103.8348.1789.89841forward
CNT30577653Populus trichocarpaOryza barthii60.3780.6989.16489reverse complement

Expression of CNT3025558

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLRIARIPEEDAIRLMRNKKEYRKFEWLKLKQLLSK*

Sequence

>CNT3025558
CATGCTCAGAATAGCTAGGATTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTA
CTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCATGAG
ACTTTTATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATT
CGATTTCTAAAAAGGATTACTAATCCTTAACTTTTCGAGAAATCCTTCATCAGTGGTTGTGAATGACCGATTTTTCTCAATCTTTTCGACCTCTTGGTTC
CGTAGGAGCAAGTCAGAAAGATTGAGAAATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGAGATGATCATCTTAGGGTGATCTTTTTGTCGACG
GATGCTCCTATTACACTTGTAGTCTCTGAAGGATGAGAACCAACTATGTAGCATCTACATCGAGAATTTAAGTATTGTATACGTCATTAGTCCGATCTTT
TGTAGGAGCTACCCGTAATAACGAACTTGCAAAATGAATCTGTTTATCATAAAGAGATTTGTTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAAC
AAGTAAAAGTTATGTCTTGGTCCGAGTGGGGATAGCATTTCTCTTCTGCATGTCCATGGAGTTTTGAAAAATCCAAGCATCTCAGAGATAGATAGAGAGG
TAGGAATTTT