Detailed information on CNT30255378


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690730Avena sativaOryza sativa19.5323.7890.3683forward
CNT30672671Avena sativaSetaria viridis20.9421.9891.0189forward
CNT30520803Avena sativaSetaria italica20.9420.0993.2689forward
CNT30190430Avena sativaSecale cereale20.9415.8184.2789forward
CNT30438687Avena sativaAegilops tauschii19.7624.4985.7184forward
CNT30595633Avena sativaOryza meridionalis19.5325.5490.3683forward
CNT30148777Avena sativaBrachypodium distachyon20.249.6597.6786forward
CNT30574749Avena sativaOryza barthii19.5321.9690.3683forward

Expression of CNT30255378

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLAGRPYAGGGVLTCSCSRSSRRRCRTCSRRRTRTCRRSKTFSLLPGVVVATEEGEEELARR*

>peptide 2 (56 aa)
ERCPWITVEAHILDLDEARGRTRIDRSVGRSCARHTRTAELREHVRGCLFYLAAAS*

Sequence

>CNT30255378
AGAGAGGTGTCCATGGATCACAGTTGAGGCGCATATATTAGACCTTGACGAGGCACGAGGGAGGACAAGGATCGATCGGTCGGTCGGTCGATCATGCGCG
AGACACACACGTACAGCAGAATTAAGGGAACACGTACGGGGATGTTTATTTTATTTAGCAGCAGCTAGCTAGTGACACGCTTGCTGCACGGCGGTGGTGT
GGTGGCGGGTGTTGGTCCTCCTCGTCCTCATGCTCGCCGGCCGGCCGTACGCCGGCGGCGGGGTCCTCACTTGCAGTTGCAGCAGGAGCAGCCGCAGGCG
GTGCCGCACTTGCAGCCGGCGCCGCACCCGCACTTGCCGCCGCAGCAAGACATTCTCGCTCCTTCCGGGAGTGGTGGTGGCTACTGAGGAGGGAGAAGAG
GAGCTAGCTCGTAGATGAATGCTTC