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Detailed information on CNT3025537


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7J1C5|PSBF_ACOCL, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020910Populus trichocarpaCitrullus lanatus17.2931.0894.269forward
CNT30202349Populus trichocarpaPisum sativum41.8511.5792.22167forward
CNT30491981Populus trichocarpaOlea europaea25.814.7995.15103forward
CNT30286499Populus trichocarpaTriticum aestivum29.579.0994.92118forward
CNT30234601Populus trichocarpaBrassica oleracea21.5518.2687.2186forward
CNT30609560Populus trichocarpaGossypium raimondii41.619.9584.94166forward
CNT30355329Populus trichocarpaLactuca sativa31.3317.6196125forward
CNT30149874Populus trichocarpaBrachypodium distachyon42.6113.1990.59170forward
CNT30576251Populus trichocarpaOryza barthii31.3322.3687.2125forward
CNT30117202Populus trichocarpaOryza nivara42.619.1390.59170forward

Expression of CNT3025537

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTQYRILVIISAKDVLLCFQTCELHIFLYSQRGSIP*

>peptide 2 (44 aa)
MNDPISNTGNNISKRRSPVLPDMRAPHILVQSKGIDSVKDEISK*

Sequence

>CNT3025537
GTAGGTACTCCGTGAACAGCAAGCCATCGCACTGTAAAAATTGGATAGGTTCGATCTATAGTCATTGGGCCCTCCTAACCTAAAAAGATCTACTAAATGT
CGGCTCTCTGTAAATATTCATACGGCCAGTTATTAAGGGAATTCCTAAGCTAACCTGTGCTGACGAATAACCAACCTGCAATGAATAGGGAAGGTATAGT
AATGCTATGAATGACCCAATATCGAATACTGGTAATAATATCAGCAAAAGACGTTCTCCTGTGCTTCCAGACATGCGAGCTCCACATATTCTTGTACAGT
CAAAGGGGATCGATTCCGTAAAAGACGAGATCAGTAAATGAAATTCACTGAAATTCATCTTTGTGAGATCGTCAATATCGTACCGAGGGTTTCTTTAAA