CANTATAdb - search

Detailed information on CNT30255339

BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 2e-175

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30141287	Avena sativa	Lolium perenne	89.75	87.81	89.59	893	forward

Expression of CNT30255339

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVMRPPPRTDEAPASFIAGEESAMVAAAIAIG*

>peptide 2 (29 aa)
MAQREWMTSNSRFLAKVSGSAESPAVSHP*

>peptide 3 (78 aa)
MYTPRNSFFKLLLAGYKVGGEGPRIVVDGVGEVVGKVLERTLTGDDGLHKEPKHGEHGEAAILELLHLELSERLRIIS*

>peptide 4 (43 aa)
MACTKNPNMENMARRPFLSSFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30255339
TATGAAAGTCAAGATCCTTGATTTTCCTTGTAAACATATCATGTTATGACATAGGTCATTGACCAACATGGAAGTAGACCTCAACTGCAAACGTCTCTGA
TAGATCACATCTTAATGGTACATCTAGAGTCTAGAGTACATGTATACTCCTAGGAACTCATTTTTTAAGTTATTACTTGCCGGGTACAAAGTTGGTGGCG
AAGGCCCACGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGACCCTTACCGGTGACGATGGCTTGCACAAAGAACCCAAACA
TGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTCACCTTGAGCTCAGCGAACGCCTCAGGATCATCAGCTAGACCAAGGGGGTCGAAGCTGCCACC
GGGGTAGAGCGGGTCCACGATCTCTCCGAGTGGGCCACCGGCAACACGGTACCCCTCAACTGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGG
ATGCTCTGGGCATGGACAAGGCTGGGGTTGCCGAGGTAGTCTAGGCCACCCTCGCTGAAGATCTGGGAACCAGCCTTGAACCAGACGGCCTCGCCAAACT
TGACGCCGTTGCGGGCGAGCAGCTCGGGAAAGACACATCCGAGCGCGCCGAGCATGGCCCAACGGGAGTGGATGACCTCCAACTCACGGTTCTTGGCGAA
GGTCTCTGGGTCGGCGGAGAGCCCGGCGGTGTCCCACCCATAGTCACCTGGGAACTCCCCGTTGAGGTAGCTCGGCGGCTCACCAGAAAGTGGGCCGAGG
TAGAGCACACGGTCGGGGCCATACCATGGACTGCTGGAGCCAGCCGCCTTGGCCGTGGCCTTGCGCATGGTGATGCGCCCGCCGCCCAGGACGGATGAGG
CTCCGGCGAGCTTCATAGCAGGGGAGGAGAGCGCCATGGTTGCCGCTGCCATTGCTATTGGATAGATGAGAGCAAGCTGCTGATGTGCTGCTGCT