CANTATAdb - search

Detailed information on CNT30255211

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30371463	Avena sativa	Oryza glumipatula	5.7	26.22	89.83	59	reverse complement

Expression of CNT30255211

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVMGGSLERTERRMTICGVEVGGEATPQRNGIKSCRISLLLACTS*

>peptide 2 (57 aa)
GFMPRLDFSVAALDFLAAVWGFLSRFVFSVAALGLGGSVVLGFVLAASRDLGPADSC*

>peptide 3 (38 aa)
MYIYVVLNLGLERSAPSVGWLLAAQQAPRGVPRVGPSM*

>peptide 4 (77 aa)
GIYAAIRFLGGGVGFLGGGVGISVAVRLLGGGVGSWRQCGSWFCSGCFAGSWPGGFLLIVGAVGVCEVNVILVDCLD*

Sequence

>CNT30255211
GGGGATTTATGCCGCGATTAGATTTCTCGGTGGCGGCGTTGGATTTCTTGGCGGCGGTGTGGGGATTTCTGTCGCGGTTCGTCTTCTCGGTGGCGGCGTT
GGGTCTTGGCGGCAGTGTGGTTCTTGGTTTTGTTCTGGCTGCTTCGCGGGATCTTGGCCCGGCGGATTCTTGCTGATTGTTGGTGCGGTTGGTGTATGCG
AGGTCAATGTTATCTTAGTTGATTGTTTGGACTGATGGTGGGATTCTTCATCAACTGGGAGTAGCGGCAGGTCCATGGTGTCGATTGGCTCGATCGGGTG
GTAGGGCTCTGTGGAACAGCTCCACGCCAAACCTAGCGGTCTCAATGGGAAGCTTGGCTCCCCTTGCTTGAGGCTACAAAATGCTCTTCCAGATTGGCTA
TTCAAGGTATGTACATTGGCCTTGAAAGCAACATGTAAACATTTAGTCTCCATTGGTGTGGTTGCCAGAAAGAATAACACAAAAACGGATGATTTTCTTT
ACAAGCGTATTATTATAATGTACATTTATGTAGTGTTGAATTTGGGTTTGGAAAGATCTGCTCCTTCCGTGGGTTGGTTACTGGCAGCACAACAAGCTCC
CAGAGGGGTTCCTCGTGTTGGTCCTTCTATGTAGTGAGATAAGTTATTTTTGTATTTTGGCTCATGGTTATGGGTGGTTCTTTGGAGAGGACAGAGAGGA
GAATGACGATTTGTGGTGTTGAGGTTGGAGGGGAGGCCACTCCACAGAGAAATGGAATAAAAAGCTGCCGAATTAGCCTATTGCTTGCGTGTACCAGTTG
AAGTATTTTGAGTACCTATTTTTTGAACTGAACTGATGAAGAATAGTTGGAAGAAGAAAAGCCTCTCAGAATTGGTTTTGTTATTGTGAGGATATTTTTG
TGTATTTATCCATAGGAAGGAACATATGAGGATAAGAGAAAATTGTTTTTAATTCATTCTATTCAAGTGATATATATCCTATACTTTTCTCCATTTTCAT
CTGAAAAGTCCTTTTATTCTATTTCATTATTCCAC