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Detailed information on CNT3025499


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 5e-67

BLAST vs NONCODE:
NONPOPT000587, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225171Populus trichocarpaHordeum vulgare9.8929.0388.8972forward
CNT30508528Populus trichocarpaSolanum lycopersicum34.7548.7582.61253forward

Expression of CNT3025499

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYSYTVWQKHTDEIINTISSETKQRRENSWKTLGFQ*

>peptide 2 (42 aa)
MAIIPGLKSNFSFTMLRISLSGIFPVPYVSTKTDRGSGTPIA*

>peptide 3 (61 aa)
EVRAIILFHSEIHLSVVHPFTVLHLSSLLFSSLLKQSHEVSRQLGLETPHVFLYCMAKAYG*

>peptide 4 (80 aa)
MPLLLLGLLRFEGLHYLPCEVRVVPSKVTISSCLQEPAIATPLKIQANGYHSRPEVKFFLHDVENLLVWDLSSPICVNKN*

Sequence

>CNT3025499
GGAAGTTAGAGCAATCATCTTATTCCACAGTGAAATTCATTTATCTGTAGTTCATCCTTTTACAGTATTACATCTCTCTTCTCTTCTCTTCTCTTCTCTT
CTTAAACAATCTCATGAAGTATCAAGGCAACTAGGACTCGAGACTCCACATGTATTCTTATACTGTATGGCAAAAGCATACGGATGAAATAATAAATACA
ATAAGCAGCGAAACAAAACAAAGGCGAGAAAACAGTTGGAAGACTCTTGGGTTTCAGTGATGCTGCCTAGAGCAAGCAAATTATTGATCGCAGGCCATGC
CACTTTTACTGTTGGGGCTTCTCAGATTTGAGGGGCTTCACTACCTCCCATGTGAAGTCAGGGTCGTCCCTTCCAAAGTGACCATAAGCAGCTGTCTTCA
AGAACCTGCCATTGCCACCCCTCTTAAGATCCAAGCTAATGGCTATCATTCCAGGCCTGAAGTCAAATTTTTCCTTCACGATGTTGAGAATCTCCTTGTC
TGGGATCTTTCCAGTCCCATATGTGTCAACAAAAACTGACAGAGGTTCTGGCACACCGATAGCATAAGAGACCTGAACAATGCATCGGCGAGCAAGGCCA
CTTGCAACAATGCTCTTTGCTGCCTGTCTAACAATGCGGGCACCGAGCTTGGTGGCAAGAACATGACTAAGGGGCATAAGCTCAGGGGTCTCATCGGTGG
CATAGCCAAACATGTGACCTTGGTCACC