CANTATAdb - search

Detailed information on CNT30254935

BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 6e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30547549	Avena sativa	Ipomoea triloba	56.82	49.48	80.68	383	forward
CNT3069242	Avena sativa	Quercus suber	56.82	71.46	83.29	383	forward
CNT30398097	Avena sativa	Triticum turgidum	61.57	54.25	91.08	415	forward
CNT30141675	Avena sativa	Lolium perenne	50.89	38.41	95.34	343	forward
CNT30605939	Avena sativa	Gossypium raimondii	18.69	22.87	83.33	126	forward

Expression of CNT30254935

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTRYASAASWSARTAWLWKRRSVLKSCAISRTRRWKGSLRMRSSVLFWYLRISRSATVPGL*

>peptide 2 (65 aa)
RSSTGRNYLLTSNNNSFQHTFGSSQTKRTSPTESYTNHISSNTEGNLARQVGTTKSSGASTNLGL*

Sequence

>CNT30254935
TACGATCAAGCACAGGACGAAATTACTTGCTAACAAGTAACAATAATAGTTTCCAACATACGTTTGGCTCATCGCAAACCAAAAGAACATCACCGACAGA
GTCTTACACCAACCACATCTCATCTAACACAGAAGGTAACCTAGCACGGCAAGTAGGAACTACGAAATCGTCAGGGGCATCAACGAATCTGGGCTTGTGA
AGACTCGACGATCCCCTCTCCGATCGACTACAGGCCTCGGCAGCGAGTCAGCCTAGGCGCGCTCCCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGG
CATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCGACGAGGTACGCCTCCGCGGCCTCCTGGAGCGCCAGAACGGCG
TGGCTCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGCGCGATCTCGCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGGAGCTCCGTGCTCTTCTGGT
ACTTGCGGATCTCGCGGAGCGCCACCGTGCCGGGCCTGTAGCGGTGGGGCTTCTTCACGCCGCCGGTGGTCGGCGCCGACTTCCTCGCGGCCTTGGTGGC
GAGCTGCTTCCTGGGGGCCTTGCCGCCGGTGGACTTGCGGGCGGTCTGCTTGGTACGGGCCATCGCGCTCCTCT