Detailed information on CNT30254921


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673990Avena sativaSetaria viridis36.422.6688.5187forward
CNT30515355Avena sativaJuglans regia33.0512.8586.0879forward
CNT30183892Avena sativaSecale cereale38.9117.5889.2593forward
CNT30304990Avena sativaTriticum aestivum97.0792.4394.83232forward
CNT30226503Avena sativaHordeum vulgare32.6413.989.7478forward
CNT30399846Avena sativaTriticum turgidum66.1131.9891.77158forward
CNT30589124Avena sativaMusa acuminata61.5148.3685.71147forward
CNT30442668Avena sativaAegilops tauschii46.8613.5894.64112forward
CNT30669889Avena sativaTriticum dicoccoides97.0791.3493.1232forward
CNT30580015Avena sativaEchinochloa crusgalli94.5640.5789.82226forward

Expression of CNT30254921

Peptides detected in this lncRNA

>peptide 1 (78 aa)
VLDLLELELLELDGVLGEAERVEGDGQELDRKDGRQVAPRHRVAQVGRLTAGDRRPLLSLHPVAETQRLRQQHPGLHAS

>peptide 2 (45 aa)
FLISLSLSSSNLTGSLEKPSGSKAMARNSIARMVGRLPHGTGLPR*

Sequence

>CNT30254921
GTTCTTGATCTCCTTGAGCTTGAGCTCCTCGAACTTGACGGGGTCCTTGGAGAAGCCGAGCGGGTCGAAGGCGATGGCCAGGAACTCGATCGCAAGGATG
GTCGGCAGGTTGCCCCACGGCACCGGGTTGCCCAGGTAGGTCGCCTGACCGCCGGGGATCGCCGCCCACTCCTGAGCCTTCACCCAGTTGCCGAGACCCA
GCGCCTCCGGCAACAACACCCCGGGCTGCACGCGTCCAT