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Detailed information on CNT30254744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30686530Avena sativaTriticum urartu9.2226.8193.6563forward
CNT30364526Avena sativaSorghum bicolor18.8928.2983.72129forward
CNT30495795Avena sativaDigitaria exilis31.0412.984.91212forward

Expression of CNT30254744

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRSRQRRPRVASSSARRKNPGRGRELGSGAATENAGPA*

>peptide 2 (31 aa)
AETLRERETKQKGAAFRGRERRTRLMQILSS*

>peptide 3 (55 aa)
MRARRCGAGSGGRGWPPPRRAGRIPAGGGSSAPGPRRRTPGRRRSPRWRRRTRSS*

Sequence

>CNT30254744
GCGGAGACGTTGAGGGAGAGGGAGACGAAGCAGAAAGGTGCGGCCTTTAGAGGAAGGGAGCGGCGCACACGGCTGATGCAGATCCTGTCATCATGAGAGC
TCGCCGATGCGGAGCAGGCAGCGGAGGCCGCGGGTGGCCTCCTCCTCGGCGCGCCGGAAGAATCCCGGCAGGGGGAGGGAGCTCGGCTCCGGGGCCGCGA
CGGAGAACGCCGGGCCGGCGTAGGTCGCCGCGTTGGCGGCGACGGACACGATCTTCTTAGTCGGCACGACGGCAGGTGCCTGGGGGCCGATCCGGCCGGT
GGTGGAGAGCACACGCTTGTCTGCCGGCGGGGCTTGCGCCCGGGCCGGGACGGGCGCAGGGGCAGGTGAAGGGGCCGGAGCCGGAGCGGGAGCCGGCGGC
TCCTCGCCACGCTTCAGGATCCGGAGCACCACCTGCGGCTTGGGCGTCTCCTTGGTCGGGGAAGGCTGCTTGCGGGCAGGCTTCGCCGGCGGTGACCGTC
GGCCCTTGGGAGGCGACGACGCTACGGGCGCCTGGTTAGGGGGCGCCGGAGAAGCAACCGCCACCTTGGGCGGCGGCGATGCGGGCTTGGGGTGGCGCCG
GCGGCGCGGCTTGACGGGGGAGGCGGCGAAGGCGTCGAGATGCATCCTGTTGGCGAGCGCGTCGTGGGATCTGAGCACCGCCG