Detailed information on CNT30254596


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 7e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Avena sativaOryza sativa33.5649.4485.17445forward
CNT30676635Avena sativaSetaria viridis21.3481.3285.16283forward
CNT30404662Avena sativaBeta vulgaris24.1340.9279.69320forward
CNT30631438Avena sativaVigna unguiculata23.2346.5382.79308forward
CNT30487971Avena sativaOlea europaea24.1361.5478.44320forward
CNT30709232Avena sativaGlycine max12.5922.3986.23167forward
CNT30122306Avena sativaPhyscomitrium patens8.5239.2482.3113forward
CNT30287617Avena sativaTriticum aestivum22.151.4984.3293forward
CNT30393350Avena sativaTriticum turgidum17.5723.2880.69233forward
CNT30171906Avena sativaTrifolium pratense17.7226.9283.83235forward
CNT30144776Avena sativaMedicago truncatula21.8722.0983.1290forward
CNT30658759Avena sativaTriticum dicoccoides25.2656.5985.67335forward
CNT30311914Avena sativaCamelina sativa37.4880.4278.67497forward
CNT303614Avena sativaZea mays9.3521.7586.29124forward
CNT30717839Avena sativaMalus domestica golden9.9525.9886.36132forward
CNT30685178Avena sativaTriticum urartu17.5728.6980.69233forward
CNT30150466Avena sativaBrachypodium distachyon25.5710092.04339forward
CNT30101573Avena sativaOryza rufipogon21.8734.2483.45290forward
CNT30581271Avena sativaEchinochloa crusgalli11.1627.9283.78148forward
CNT30498115Avena sativaDigitaria exilis26.6244.5183353forward
CNT30116632Avena sativaOryza nivara13.2745.9589.2176forward
CNT30558331Avena sativaPanicum hallii31.0749.7685.68412forward

Expression of CNT30254596

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAWHHSLGCSLHPPPYLGIFQLLEDLFLLASACQTLLSA*

>peptide 2 (33 aa)
MRGQHWDSSPLRHYSSVAKHGYSNLERACTPQK*

>peptide 3 (41 aa)
MPSESTSTMVESPSLTSPANIFSARLSSNSLMIARRNGLAP*

>peptide 4 (33 aa)
MTLLPTFDVMINSVFLKSTVRPLLSVNLPSSSI*

Sequence

>CNT30254596
CCCCCTTAACAGATTGAAGGATATATTAGCAAGATAGATTATCCATGCCATTTAGGACTGTAACTAAAGCGAGATAAGCAGCTAAAAATAACTAGAGGAA
GAAAGCTAGGGATGAGATATTATCAATTACATAGCCATGCATCGTCATGTATAAATATGTACTCCCTCCGTTTCAAAATATAAGATGTTTTAGTTTTGTG
AAGCAAATGTATCTAGACTTATTTAAGTATTAGGTTCATTAAGGTTTGAAGTGAATCTACACACTAAAAGAAGTCTAGATACATTTTCTTTACAAACCTA
AAACATCTTATATTTTGAAACGGAGGGAGTAAGACTGAAGAATTTCAGTCCCATGCACAGCCATCGTTATTGAAGATTTTCTAGGCATTCGTCCATGAGA
GGGCAGCACTGGGATTCAAGCCCTCTACGACATTACAGTTCCGTAGCAAAGCACGGGTATTCAAACCTGGAAAGGGCTTGTACTCCACAAAAATAAAGCT
TCCAGGTATTCTTCAAAAGCAAAGGAACTAAACATCTAGGCGTGTTGTCCCGGTGAGCTATGCAGAAGTTTCTACTGCCTTCCATGCAACAAGTTCTGAG
GACGCAACACATCCACGCCACAGCTTGAGGTGAGAAGCTGGATTCGGGAGTCATGTGCTCCAGATGATTAGGTGCTCAAAATAGGCGGCAGTGGCGTCTG
CTTCCGGAGTCATGTGCTCCAGATGATTAGGTGCTCAAAATAGGCGTCAGCGGCTCTCGGACGCCGCTGCCACCATTGAGTACTATAACTATGCCTTCTG
AATCAACATCGACGATGGTGGAATCACCTTCTTTGACCTCACCAGCTAACATCTTTTCTGCCAGGCTGTCTTCCAACAGCCTCATGATAGCGCGCCGCAA
TGGCCTGGCACCATAGCTTGGGTTGTAGCCTTCATCCACCACCCTATCTCGGAATCTTTCAGTTACTTGAAGATCTATTTCTTTTAGCTTCAGCCTGTCA
AACACTTCTTTCAGCATAATGTCTGCTATTTCCTTCACCTCCAGCTTTGTCAGCTGACGGAAAACAATCATCTCATCTAATCTGTTCAAGAACTCGGGCC
GGAAGTACTGCTTTAGCTCCTCAGTCACCAGGCTCTTGATCCTGTTATAGCTGGTGTCCTTCTCATTGTAATCAAGATCGAATCCAATCTTGCGGCCTCC
CTTCTCAATGACACTGCTTCCAACATTTGACGTCATGATCAATAGTGTATTCTTGAAATCAACTGTCCGTCCCTTGCTGTCAGTCAATCTTCCATCTTCA
AGTATTTGAAGCATCATGTTGAAGAC